Gene detail information of Glyur007839s00046238.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21440.1 | 2.00E-76 | MYB-like 102 |
| NR | XP_006594633.1 | 5.78E-161 | PREDICTED: protein ODORANT1 [Glycine max] |
| Swissprot | tr|Q8GWP0|MYB39_ARATH | 6.00E-69 | Transcription factor MYB39 |
| trEMBL | tr|I1M2D6|I1M2D6_SOYBN | 2.00E-161 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G32090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07839 | 1089 | 2678 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007839s00046238.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 2.50E-15 |
| Glyur007839s00046238.1 | PF00249.26 | Myb_DNA-binding | 67 | 111 | 1.70E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.406 |
| SRR1783600 | control | 9.510 |
| SRR1783602 | moderate drought stress | 11.328 |
| SRR1811619 | moderate drought stress | 11.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.419 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.408 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.165 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.165 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.501 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.353 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.397 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.628 |
| SRR2967015 | Control (Tissue:root) | 4.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.816 |
| SRR9715740 | Leave | 1.064 |
| SRR9715741 | Leave | 0.704 |
| SRR9715739 | Root | 4.667 |
| SRR9715742 | Root | 4.697 |
| SRR9715743 | Root | 5.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 40.764 |
| SRR8749028 | MeJA induced 9h | 132.655 |
| SRR8749029 | MeJA induced 9h | 67.339 |
| SRR8749030 | Uninduced | 15.895 |
| SRR8749031 | Uninduced | 4.024 |
| SRR8749032 | Uninduced | 10.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 38.367 |
| SRR8400027 | Control-Root | 29.690 |