Gene detail information of Glyur007854s00043983.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66840.1 | 2.00E-45 | SAP domain-containing protein |
| NR | XP_004510536.1 | 0 | PREDICTED: zinc finger CCCH domain-containing protein 62-like [Cicer arietinum] |
| Swissprot | tr|Q338N2|C3H62_ORYSJ | 7.00E-68 | Zinc finger CCCH domain-containing protein 62 |
| trEMBL | tr|K7MEJ2|K7MEJ2_SOYBN | 3.00E-170 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G01296.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07854 | 77 | 3246 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007854s00043983.1 | PF02037.22 | SAP | 97 | 131 | 1.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.965 |
| SRR1783600 | control | 3.857 |
| SRR1783602 | moderate drought stress | 2.425 |
| SRR1811619 | moderate drought stress | 2.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.963 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.547 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.469 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.457 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.026 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.381 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.445 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.505 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.358 |
| SRR2967015 | Control (Tissue:root) | 4.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.818 |
| SRR9715740 | Leave | 0.235 |
| SRR9715741 | Leave | 0.341 |
| SRR9715739 | Root | 0.021 |
| SRR9715742 | Root | 0.779 |
| SRR9715743 | Root | 1.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.291 |
| SRR8749028 | MeJA induced 9h | 9.044 |
| SRR8749029 | MeJA induced 9h | 4.581 |
| SRR8749030 | Uninduced | 3.134 |
| SRR8749031 | Uninduced | 1.049 |
| SRR8749032 | Uninduced | 1.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.962 |
| SRR8400027 | Control-Root | 5.809 |