Gene detail information of Glyur007887s00047387.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G51171.1 | 3.00E-07 | F-box and associated interaction domains-containing protein |
| NR | KEH15697.1 | 7.55E-25 | F-box protein interaction domain protein [Medicago truncatula] |
| Swissprot | tr|Q1G3N6|FB201_ARATH | 3.00E-08 | Putative F-box protein At3g51171 |
| trEMBL | tr|A0A072TE83|A0A072TE83_MEDTR | 3.00E-25 | F-box protein interaction domain protein {ECO:0000313|EMBL:KEH15697.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07887 | 3065 | 3385 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007887s00047387.1 | PF00646.28 | F-box | 3 | 37 | 3.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.436 |
| SRR1783600 | control | 0.214 |
| SRR1783602 | moderate drought stress | 1.534 |
| SRR1811619 | moderate drought stress | 1.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.665 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.670 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.348 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.238 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.125 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.290 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.450 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.171 |
| SRR2967015 | Control (Tissue:root) | 0.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.884 |
| SRR9715741 | Leave | 0.603 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.361 |
| SRR9715743 | Root | 0.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.109 |
| SRR8749028 | MeJA induced 9h | 2.377 |
| SRR8749029 | MeJA induced 9h | 0.521 |
| SRR8749030 | Uninduced | 2.295 |
| SRR8749031 | Uninduced | 0.882 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.407 |
| SRR8400027 | Control-Root | 0.848 |