Gene detail information of Glyur007927s00046637.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31740.1 | 9.00E-10 | beta-galactosidase 15 |
| NR | XP_003595331.1 | 4.72E-13 | Beta-galactosidase [Medicago truncatula] |
| Swissprot | tr|Q9C6W4|BGA15_ARATH | 6.00E-11 | Beta-galactosidase 15 (Precursor) |
| trEMBL | tr|G7IIN1|G7IIN1_MEDTR | 2.00E-13 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07927 | 1035 | 3299 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007927s00046637.1 | PF01301.14 | Glyco_hydro_35 | 40 | 62 | 0.00017 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.036 |
| SRR1783600 | control | 1.992 |
| SRR1783602 | moderate drought stress | 6.671 |
| SRR1811619 | moderate drought stress | 7.162 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.615 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.719 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.193 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.240 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.893 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.445 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.061 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.528 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.592 |
| SRR9715740 | Leave | 0.055 |
| SRR9715741 | Leave | 3.486 |
| SRR9715739 | Root | 0.117 |
| SRR9715742 | Root | 2.436 |
| SRR9715743 | Root | 1.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.500 |
| SRR8749028 | MeJA induced 9h | 2.131 |
| SRR8749029 | MeJA induced 9h | 0.307 |
| SRR8749030 | Uninduced | 1.082 |
| SRR8749031 | Uninduced | 3.086 |
| SRR8749032 | Uninduced | 0.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.761 |
| SRR8400027 | Control-Root | 3.177 |