Gene detail information of Glyur007972s00045627.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68460.1 | 2.00E-86 | isopentenyltransferase 1 |
| NR | AES62904.2 | 1.67E-172 | adenylate isopentenyltransferase [Medicago truncatula] |
| COG | YP_003651745.1 | 2.00E-24 | tRNA delta(2)-isopentenylpyrophosphate transferase [Thermobispora bispora DSM 43833] |
| Swissprot | tr|Q5GHF7|IPT_HUMLU | 3.00E-137 | Adenylate isopentenyltransferase |
| trEMBL | tr|G7ID98|G7ID98_MEDTR | 6.00E-173 | Adenylate isopentenyltransferase {ECO:0000313|EMBL:AES62904.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07972 | 1846 | 2745 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10760 | IPT | EC:2.5.1.27 2.5.1.112 | Zeatin biosynthesis | map00908 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007972s00045627.1 | PF01715.12 | IPPT | 42 | 117 | 1.20E-18 |
| Glyur007972s00045627.1 | PF01715.12 | IPPT | 136 | 240 | 7.70E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.162 |
| SRR1783600 | control | 0.163 |
| SRR1783602 | moderate drought stress | 0.042 |
| SRR1811619 | moderate drought stress | 0.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.103 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.400 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.591 |
| SRR2967015 | Control (Tissue:root) | 0.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.139 |
| SRR9715739 | Root | 0.110 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.797 |
| SRR8749028 | MeJA induced 9h | 0.625 |
| SRR8749029 | MeJA induced 9h | 0.230 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.056 |
| SRR8400027 | Control-Root | 0.089 |