Gene detail information of Glyur008016s00045785.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65960.1 | 1.00E-21 | glutamate decarboxylase 2 |
| NR | XP_004503101.1 | 2.84E-32 | PREDICTED: glutamate decarboxylase 1-like [Cicer arietinum] |
| COG | YP_006765925.1 | 2.00E-09 | glutamate decarboxylase [Leptospirillum ferriphilum ML-04] |
| Swissprot | tr|Q42472|DCE2_ARATH | 3.00E-25 | Glutamate decarboxylase 2 |
| trEMBL | tr|I1LM82|I1LM82_SOYBN | 2.00E-31 | Glutamate decarboxylase {ECO:0000256|RuleBase:RU361171} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08016 | 685 | 888 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01580 | E4.1.1.15, gadB, gadA, GAD | EC:4.1.1.15 | Butanoate metabolism | map00650 |
| Alanine, aspartate and glutamate metabolism | map00250 | |||
| beta-Alanine metabolism | map00410 | |||
| Taurine and hypotaurine metabolism | map00430 | |||
| Quorum sensing | map02024 | |||
| GABAergic synapse | map04727 | |||
| Type I diabetes mellitus | map04940 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.587 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.171 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.239 |
| SRR2967015 | Control (Tissue:root) | 0.254 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.692 |
| SRR9715740 | Leave | 4.848 |
| SRR9715741 | Leave | 2.490 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.157 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.418 |
| SRR8400027 | Control-Root | 0.391 |