Gene detail information of Glyur008085s00046202.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G35650.14.00E-32isocitrate dehydrogenase III
NRKHN09360.17.30E-41Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [Glycine soja]
COGYP_008088736.14.00E-15isocitrate dehydrogenase, NAD-dependent,mitochondrial type [Chthonomonas calidirosea T49]
Swissprottr|O81796|IDH3_ARATH2.00E-38Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial (Precursor)
trEMBLtr|I1JCB1|I1JCB1_SOYBN4.00E-41Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G04780.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0808527403062-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00030IDH3 EC:1.1.1.41 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0000287  magnesium ion binding

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur008085s00046202.1PF00180.15Iso_dh8715.60E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.146
SRR1783600control10.297
SRR1783602moderate drought stress6.860
SRR1811619moderate drought stress7.369

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.837
DRR006520Root Summer glycyrrhizin high producing strain10.591
DRR006521Root Winter glycyrrhizin high producing strain8.932
DRR006522Root Winter glycyrrhizin high producing strain6.685
DRR006523Root Summer glycyrrhizin low producing strain0.179
DRR006524Root Summer glycyrrhizin low producing strain0.586
DRR006525Leaf Summer glycyrrhizin high producing strain6.352
DRR006526Leaf Summer glycyrrhizin high producing strain6.192

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.120
SRR2868004Drought Stress(Tissue:root)3.600
SRR2967015Control (Tissue:root)2.845

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave69.799
SRR9715740Leave57.815
SRR9715741Leave80.280
SRR9715739Root19.059
SRR9715742Root28.750
SRR9715743Root24.075

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h31.625
SRR8749028MeJA induced 9h20.931
SRR8749029MeJA induced 9h35.549
SRR8749030Uninduced28.820
SRR8749031Uninduced24.282
SRR8749032Uninduced23.229

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.087
SRR8400027Control-Root46.495

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved