Gene detail

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Gene detail information of Glyur008088s00044599.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26340.1	3.00E-33	F-box/RNI-like/FBD-like domains-containing protein
NR	XP_003612124.1	2.36E-128	F-box family-3 [Medicago truncatula]
Swissprot	tr\|Q8H1R7\|FDL27_ARATH	1.00E-37	F-box/FBD/LRR-repeat protein At4g26340
trEMBL	tr\|A0A072TQY2\|A0A072TQY2_MEDTR	7.00E-127	F-box/RNI/FBD-like domain protein {ECO:0000313\|EMBL:KEH19807.1}

Sequence

Transcript Sequence

>Glyur008088s00044599.1
ATGGCTGAATCACCCTTNAAACGACGGGAAACGGAAGAAAACGCGGACAGGATCAGTAGTCTACCGGAGTCATTGCTGTACCACATCCTGTCCTTCCTCCCGACCAAAACCTGCGTGGCCACGAGCATCCTCTCTCGCAGGTGGCTCCACCTCTGGAAGCATCTNCAGGTGCTCGACTTCGACGACGACGTTCACTACCACGAACGGTTGCAACGGTTCCAAAGGTTCGCCGTTTTCGTGAACGGCGTGCTGTCACTTCGCAGTTCCCGCGAAATCCGAAAGATGAGACTCTCCTGTGGCCACTCCGTCACTGACACATTCTANGCCCACTCCATCGACACGTGGATCCTCGCCGCCGTTGGGCCCCACATCCAGGAGCTCCACCTCAAACTCGTTTCCTCCGACAGACCCCGNCGATCCGACCGCATCCTTGGACCCAGCTTCCTCATCCCTGTCGCCCTCTTCAACTGCCCTAACCTTGTCTCCCTCAGGCATGTCAATCCAAACACTTCCATCGTTTGTTTCAATTTACTTTGCGGTGGAATACATGTGCGTGTGCAACGCTCTTCGGCGGTTCGATTACCATCGCTGAAGATGCTGGAACTCAAAATCGGTTGTGTGGATGTGGATTCCGTGAATACCCTCCTCTCTGGTTGCCCCATACTGGAAACTCTGGATCTTACCTTTTATGCCAAATTTTCCANCAAAGTTCGCATCCCACCTTTACCTTCTTTGAAGAGGTTGAAATTCAAGGCTCAGATGGGTAAGAGTTACCTTCAAATTGATGCTCCTGATCTCAAATACCTTAGCATTGTCCAGAGGGAATTCGGTGCCGTTGGCAACTTGCAGAACGTGGTGGAAGCGTATGTTGATGTCTTTCCCGGCCTCCGTGAACCTTATGACGGCCTCCGTGAACCTGTTGACTCTTTACTCAACTTCCTCCGAGCTCTCTCCGGAACTAAACATCTATTGTTGCAACGTTTCACAACCGAGTGGCTACTTACTGCCCCAGTTCTAGATTTTCCGGATTTTCGCTATTTACTTCATCTAGAGCTCATTCTTCCCTGTTTCAACACCAATTTTCTACTCAACGTGCTTCAGAAATGTCATGTGCTTCAAGTTCTTATAATTAAGAGCAACAAGTATGATCCATCACGTTATCCATCGACTTCACCAAGTTTGGCACTGCANTCAACAAGTGTTCCCAATTGTCTCGTATCCCACCTGAGCTCTTTTCATTTCGACGGCTATCGGGGATTTGAAGATGAGCTGGCATTTGCTGAGTATATTTTCAGTAATGGACTTGTTTTGAAGACAATGACTATCATTGATTTTTTTACTTCGTTGGACCTGAGCAAAAAGAATCGTATTCTTGAAAGATTTTCTGATATACCAAGGGGCTCTGCCATGTGCCAGCTTAAATTTGACATTGAGCCTTATCGCGCCCGTGCCTTAAGCATCACCTTTGACAATGAAGCACTGTCTTTCTATTATAACCCGATTGCCAACTTTGTATTCACGAATTTGGTCTTCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold08088	178	2430	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur008088s00044599.1	PF00646.28	F-box	17	55	5.60E-07
Glyur008088s00044599.1	PF08387.5	FBD	399	442	1.00E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	2.582
SRR1811619	moderate drought stress	2.473

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.210
DRR006520	Root Summer glycyrrhizin high producing strain	0.209
DRR006521	Root Winter glycyrrhizin high producing strain	0.073
DRR006522	Root Winter glycyrrhizin high producing strain	0.070
DRR006523	Root Summer glycyrrhizin low producing strain	2.056
DRR006524	Root Summer glycyrrhizin low producing strain	1.884
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.575
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.577

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.390
SRR2868004	Drought Stress(Tissue:root)	0.299
SRR2967015	Control (Tissue:root)	0.283

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.412
SRR9715740	Leave	0.185
SRR9715741	Leave	0.505
SRR9715739	Root	0.193
SRR9715742	Root	0.380
SRR9715743	Root	0.199

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.451
SRR8749028	MeJA induced 9h	6.000
SRR8749029	MeJA induced 9h	6.595
SRR8749030	Uninduced	1.087
SRR8749031	Uninduced	0.923
SRR8749032	Uninduced	0.627

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.366
SRR8400027	Control-Root	1.393