Gene detail information of Glyur008268s00047363.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35930.1 | 7.00E-84 | plant U-box 23 |
| NR | XP_004506267.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Cicer arietinum] |
| COG | YP_001957949.1 | 2.00E-08 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q84TG3|PUB23_ARATH | 4.00E-100 | E3 ubiquitin-protein ligase PUB23 |
| trEMBL | tr|V7AHZ2|V7AHZ2_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW04493.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08268 | 897 | 2123 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008268s00047363.1 | PF04564.10 | U-box | 7 | 79 | 3.50E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.437 |
| SRR1783600 | control | 0.508 |
| SRR1783602 | moderate drought stress | 0.722 |
| SRR1811619 | moderate drought stress | 0.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.611 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.106 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.076 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.150 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.014 |
| SRR2967015 | Control (Tissue:root) | 3.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.112 |
| SRR9715740 | Leave | 1.143 |
| SRR9715741 | Leave | 4.421 |
| SRR9715739 | Root | 0.329 |
| SRR9715742 | Root | 0.149 |
| SRR9715743 | Root | 0.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.341 |
| SRR8749028 | MeJA induced 9h | 9.894 |
| SRR8749029 | MeJA induced 9h | 2.717 |
| SRR8749030 | Uninduced | 8.428 |
| SRR8749031 | Uninduced | 28.498 |
| SRR8749032 | Uninduced | 8.757 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.622 |
| SRR8400027 | Control-Root | 2.804 |