Gene detail information of Glyur008482s00047926.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G61460.19.00E-58brassinosteroid-responsive RING-H2
NRXP_004503686.15.49E-104PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Cicer arietinum]
Swissprottr|Q9SUS5|RHA1B_ARATH3.00E-32E3 ubiquitin-protein ligase RHA1B
trEMBLtr|I3SE74|I3SE74_MEDTR1.00E-99Uncharacterized protein {ECO:0000313|EMBL:AFK38566.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold08482241750+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur008482s00047926.1PF13639.1zf-RING_2931377.00E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.017
SRR1783600control25.367
SRR1783602moderate drought stress22.063
SRR1811619moderate drought stress21.851

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain33.846
DRR006520Root Summer glycyrrhizin high producing strain35.200
DRR006521Root Winter glycyrrhizin high producing strain7.901
DRR006522Root Winter glycyrrhizin high producing strain8.108
DRR006523Root Summer glycyrrhizin low producing strain15.605
DRR006524Root Summer glycyrrhizin low producing strain16.221
DRR006525Leaf Summer glycyrrhizin high producing strain5.729
DRR006526Leaf Summer glycyrrhizin high producing strain6.336

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.382
SRR2868004Drought Stress(Tissue:root)9.704
SRR2967015Control (Tissue:root)11.928

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.201
SRR9715740Leave5.410
SRR9715741Leave3.801
SRR9715739Root34.204
SRR9715742Root17.193
SRR9715743Root21.543

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.917
SRR8749028MeJA induced 9h3.933
SRR8749029MeJA induced 9h4.382
SRR8749030Uninduced3.932
SRR8749031Uninduced0.311
SRR8749032Uninduced0.519

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.411
SRR8400027Control-Root23.743

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved