Gene detail information of Glyur008596s00043067.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G16700.15.00E-90Alpha-helical ferredoxin
NRXP_003636199.14.44E-137NADH-quinone oxidoreductase subunit I [Medicago truncatula]
COGYP_003550476.17.00E-91NADH-quinone oxidoreductase subunit I [Candidatus Puniceispirillum marinum IMCC1322]
Swissprottr|P80269|NDUS8_SOLTU5.00E-127NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial (Precursor)
trEMBLtr|G7ZVU9|G7ZVU9_MEDTR2.00E-137Uncharacterized protein {ECO:0000313|EMBL:AFK45741.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0859612445+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03941NDUFS8 EC:1.6.5.3 1.6.99.3 Oxidative phosphorylation map00190
Alzheimer's diseasemap05010
Parkinson's diseasemap05012
Huntington's diseasemap05016
Non-alcoholic fatty liver disease (NAFLD)map04932


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


cellular_component

GO:0016020  membrane


molecular_function

GO:0016651  oxidoreductase activity, acting on NAD(P)H

GO:0051536  iron-sulfur cluster binding

GO:0051539  4 iron, 4 sulfur cluster binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur008596s00043067.1PF12838.2Fer4_7971512.00E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control43.417
SRR1783600control43.529
SRR1783602moderate drought stress45.272
SRR1811619moderate drought stress44.476

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain71.031
DRR006520Root Summer glycyrrhizin high producing strain72.798
DRR006521Root Winter glycyrrhizin high producing strain49.283
DRR006522Root Winter glycyrrhizin high producing strain49.879
DRR006523Root Summer glycyrrhizin low producing strain62.796
DRR006524Root Summer glycyrrhizin low producing strain68.603
DRR006525Leaf Summer glycyrrhizin high producing strain56.221
DRR006526Leaf Summer glycyrrhizin high producing strain52.406

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)54.728
SRR2868004Drought Stress(Tissue:root)45.219
SRR2967015Control (Tissue:root)37.866

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave65.073
SRR9715740Leave59.046
SRR9715741Leave73.481
SRR9715739Root27.902
SRR9715742Root46.332
SRR9715743Root42.264

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h59.442
SRR8749028MeJA induced 9h46.863
SRR8749029MeJA induced 9h64.060
SRR8749030Uninduced55.505
SRR8749031Uninduced46.829
SRR8749032Uninduced55.872

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root79.963
SRR8400027Control-Root75.598

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved