Gene detail information of Glyur008662s00045206.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G13750.1 | 1.00E-104 | beta galactosidase 1 |
| NR | XP_003546457.1 | 8.91E-141 | PREDICTED: beta-galactosidase-like isoform X1 [Glycine max] |
| COG | YP_008089223.1 | 2.00E-43 | Beta-galactosidase [Chthonomonas calidirosea T49] |
| Swissprot | tr|P48981|BGAL_MALDO | 8.00E-134 | Beta-galactosidase (Precursor) |
| trEMBL | tr|I1MH73|I1MH73_SOYBN | 3.00E-141 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08662 | 158 | 2061 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008662s00045206.1 | PF01301.14 | Glyco_hydro_35 | 40 | 231 | 1.90E-79 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.454 |
| SRR1783600 | control | 12.490 |
| SRR1783602 | moderate drought stress | 7.734 |
| SRR1811619 | moderate drought stress | 8.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.594 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.511 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.469 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.414 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.315 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.307 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.471 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.224 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.637 |
| SRR2967015 | Control (Tissue:root) | 16.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.889 |
| SRR9715740 | Leave | 3.823 |
| SRR9715741 | Leave | 2.304 |
| SRR9715739 | Root | 2.571 |
| SRR9715742 | Root | 34.811 |
| SRR9715743 | Root | 34.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.141 |
| SRR8749029 | MeJA induced 9h | 0.128 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 83.866 |
| SRR8400027 | Control-Root | 134.567 |