Gene detail information of Glyur008680s00045864.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G04560.1 | 2.00E-29 | transferases, transferring glycosyl groups |
| NR | KEH18186.1 | 1.18E-38 | lipid-A-disaccharide synthase [Medicago truncatula] |
| COG | YP_004865649.1 | 4.00E-12 | lipid-A-disaccharide synthase [Micavibrio aeruginosavorus ARL-13] |
| Swissprot | tr|F4IF99|LPXB_ARATH | 3.00E-34 | Probable lipid-A-disaccharide synthase, mitochondrial (Precursor) |
| trEMBL | tr|A0A072TLS9|A0A072TLS9_MEDTR | 4.00E-39 | Lipid-A-disaccharide synthase {ECO:0000313|EMBL:KEH18186.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08680 | 10 | 1094 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT19 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00748 | lpxB | EC:2.4.1.182 | Lipopolysaccharide biosynthesis | map00540 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008680s00045864.1 | PF02684.10 | LpxB | 29 | 110 | 9.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.041 |
| SRR1783602 | moderate drought stress | 0.029 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.057 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.087 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.167 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.756 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.037 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.221 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.073 |
| SRR2967015 | Control (Tissue:root) | 0.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.008 |