Gene detail information of Glyur008822s00046686.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11330.1 | 5.00E-18 | S-locus lectin protein kinase family protein |
| NR | XP_003530863.2 | 4.92E-35 | PREDICTED: uncharacterized protein LOC100777856 [Glycine max] |
| Swissprot | tr|Q9SXB4|Y1130_ARATH | 3.00E-23 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 (Precursor) |
| trEMBL | tr|A0A067JLG8|A0A067JLG8_JATCU | 2.00E-46 | Uncharacterized protein {ECO:0000313|EMBL:KDP20855.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08822 | 3 | 1655 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.7.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008822s00046686.1 | PF07714.12 | Pkinase_Tyr | 5 | 46 | 1.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.493 |
| SRR1783600 | control | 2.357 |
| SRR1783602 | moderate drought stress | 2.706 |
| SRR1811619 | moderate drought stress | 2.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.173 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.328 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.548 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.710 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.322 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.099 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.793 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.300 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.612 |
| SRR2967015 | Control (Tissue:root) | 3.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 36.468 |
| SRR9715740 | Leave | 55.418 |
| SRR9715741 | Leave | 45.780 |
| SRR9715739 | Root | 1.397 |
| SRR9715742 | Root | 3.327 |
| SRR9715743 | Root | 3.685 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.025 |
| SRR8749028 | MeJA induced 9h | 21.779 |
| SRR8749029 | MeJA induced 9h | 45.931 |
| SRR8749030 | Uninduced | 46.200 |
| SRR8749031 | Uninduced | 60.216 |
| SRR8749032 | Uninduced | 91.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.439 |
| SRR8400027 | Control-Root | 4.620 |