Gene detail information of Glyur008828s00047929.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02320.1 | 7.00E-95 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | KHN08672.1 | 1.19E-152 | Putative pectinesterase/pectinesterase inhibitor 40 [Glycine soja] |
| COG | YP_006407803.1 | 3.00E-39 | pectin methylesterase [Belliella baltica DSM 15883] |
| Swissprot | tr|P85076|PME_ACTDE | 2.00E-135 | Pectinesterase |
| trEMBL | tr|V7CYE2|V7CYE2_PHAVU | 1.00E-152 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08828 | 997 | 1689 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008828s00047929.1 | PF01095.14 | Pectinesterase | 1 | 215 | 6.70E-111 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.280 |
| SRR1783600 | control | 0.250 |
| SRR1783602 | moderate drought stress | 0.137 |
| SRR1811619 | moderate drought stress | 0.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.078 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.078 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.242 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.314 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.459 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.569 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.369 |
| SRR2967015 | Control (Tissue:root) | 2.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 23.830 |
| SRR9715740 | Leave | 0.738 |
| SRR9715741 | Leave | 4.994 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.864 |
| SRR9715743 | Root | 0.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.049 |
| SRR8400027 | Control-Root | 3.515 |