Gene detail information of Glyur008843s00046783.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12560.2 | 3.00E-17 | F-box and associated interaction domains-containing protein |
| NR | XP_003601406.1 | 2.77E-87 | F-box protein [Medicago truncatula] |
| Swissprot | tr|Q9SU30|CPR30_ARATH | 2.00E-18 | F-box protein CPR30 |
| trEMBL | tr|G7J797|G7J797_MEDTR | 1.00E-87 | F-box protein interaction domain protein {ECO:0000313|EMBL:AES71657.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08843 | 230 | 1852 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.060 |
| SRR1783600 | control | 0.062 |
| SRR1783602 | moderate drought stress | 2.148 |
| SRR1811619 | moderate drought stress | 2.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.155 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.932 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.504 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.657 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.110 |
| SRR9715741 | Leave | 0.188 |
| SRR9715739 | Root | 0.611 |
| SRR9715742 | Root | 0.458 |
| SRR9715743 | Root | 0.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.009 |
| SRR8749029 | MeJA induced 9h | 0.051 |
| SRR8749030 | Uninduced | 0.039 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.910 |
| SRR8400027 | Control-Root | 1.066 |