Gene detail information of Glyur008850s00044464.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55110.1 | 6.00E-76 | indeterminate(ID)-domain 7 |
| NR | XP_010097054.1 | 1.34E-119 | Zinc finger protein MAGPIE [Morus notabilis] |
| Swissprot | tr|Q8H1F5|IDD7_ARATH | 4.00E-97 | Protein indeterminate-domain 7 {ECO:0000303|PubMed:16784536} |
| trEMBL | tr|W9R3E0|W9R3E0_9ROSA | 5.00E-120 | Zinc finger protein MAGPIE {ECO:0000313|EMBL:EXB66855.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08850 | 940 | 2082 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008850s00044464.1 | PF12171.3 | zf-C2H2_jaz | 79 | 102 | 5.60E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.987 |
| SRR1783600 | control | 6.373 |
| SRR1783602 | moderate drought stress | 9.147 |
| SRR1811619 | moderate drought stress | 8.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.826 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.894 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.975 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.419 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.360 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.042 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.542 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.324 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.869 |
| SRR2967015 | Control (Tissue:root) | 2.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.551 |
| SRR9715740 | Leave | 7.188 |
| SRR9715741 | Leave | 6.156 |
| SRR9715739 | Root | 3.938 |
| SRR9715742 | Root | 3.394 |
| SRR9715743 | Root | 4.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.057 |
| SRR8749029 | MeJA induced 9h | 0.051 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.696 |
| SRR8400027 | Control-Root | 6.353 |