Gene detail information of Glyur008871s00047049.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60900.1 | 9.00E-95 | receptor-like protein kinase 1 |
| NR | XP_006386090.1 | 2.47E-152 | hypothetical protein POPTR_0003s220001g, partial [Populus trichocarpa] |
| COG | YP_003372407.1 | 9.00E-23 | serine/threonine protein kinase [Pirellula staleyi DSM 6068] |
| Swissprot | tr|Q39202|RLK1_ARATH | 5.00E-116 | G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (Precursor) |
| trEMBL | tr|U5GRL9|U5GRL9_POPTR | 9.00E-153 | Uncharacterized protein {ECO:0000313|EMBL:ERP63887.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08871 | 3 | 1251 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.9.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008871s00047049.1 | PF00069.20 | Pkinase | 78 | 344 | 4.40E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.027 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.148 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.238 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.083 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.541 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.244 |
| SRR9715740 | Leave | 13.041 |
| SRR9715741 | Leave | 27.163 |
| SRR9715739 | Root | 0.023 |
| SRR9715742 | Root | 0.056 |
| SRR9715743 | Root | 0.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.030 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.523 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.134 |
| SRR8400027 | Control-Root | 0.235 |