Gene detail information of Glyur008920s00047250.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24090.1 | 7.00E-30 | chitinase A |
| NR | CAA88593.1 | 9.51E-74 | chitinase homologue [Sesbania rostrata] |
| Swissprot | tr|P51614|CHIT3_VITVI | 4.00E-42 | Acidic endochitinase (Precursor) |
| trEMBL | tr|Q41401|Q41401_SESRO | 4.00E-74 | Chitinase homologue {ECO:0000313|EMBL:CAA88593.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08920 | 1690 | 2181 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01183 | E3.2.1.14 | EC:3.2.1.14 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008920s00047250.1 | PF00704.23 | Glyco_hydro_18 | 30 | 150 | 2.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.699 |
| SRR1783600 | control | 1.753 |
| SRR1783602 | moderate drought stress | 0.732 |
| SRR1811619 | moderate drought stress | 0.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.587 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.689 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.113 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.315 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.701 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.676 |
| SRR2967015 | Control (Tissue:root) | 1.632 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.508 |
| SRR9715740 | Leave | 0.054 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 2.492 |
| SRR9715742 | Root | 4.069 |
| SRR9715743 | Root | 3.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.144 |
| SRR8749028 | MeJA induced 9h | 0.614 |
| SRR8749029 | MeJA induced 9h | 0.309 |
| SRR8749030 | Uninduced | 0.129 |
| SRR8749031 | Uninduced | 0.156 |
| SRR8749032 | Uninduced | 0.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.530 |
| SRR8400027 | Control-Root | 7.835 |