Gene detail information of Glyur009145s00046597.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11860.3 | 2.00E-11 | Glycine cleavage T-protein family |
| NR | XP_007147715.1 | 6.30E-16 | hypothetical protein PHAVU_006G148700g [Phaseolus vulgaris] |
| Swissprot | tr|O23936|GCST_FLATR | 1.00E-17 | Aminomethyltransferase, mitochondrial (Precursor) |
| trEMBL | tr|V7BP08|V7BP08_PHAVU | 2.00E-16 | Aminomethyltransferase {ECO:0000256|RuleBase:RU003981} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09145 | 187 | 1772 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00605 | gcvT, AMT | EC:2.1.2.10 | Carbon metabolism | map01200 |
| Glyoxylate and dicarboxylate metabolism | map00630 | |||
| Glycine, serine and threonine metabolism | map00260 | |||
| One carbon pool by folate | map00670 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.644 |
| SRR1783600 | control | 3.420 |
| SRR1783602 | moderate drought stress | 2.649 |
| SRR1811619 | moderate drought stress | 2.372 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.391 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.371 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.828 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.554 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.710 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.670 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.699 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.001 |
| SRR2967015 | Control (Tissue:root) | 0.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.770 |
| SRR9715740 | Leave | 2.540 |
| SRR9715741 | Leave | 0.052 |
| SRR9715739 | Root | 2.710 |
| SRR9715742 | Root | 0.805 |
| SRR9715743 | Root | 0.372 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.122 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.511 |
| SRR8400027 | Control-Root | 2.549 |