Gene detail information of Glyur009464s00047254.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G25620.1 | 4.00E-21 | Flavin-binding monooxygenase family protein |
| NR | XP_002516580.1 | 1.34E-36 | monooxygenase, putative [Ricinus communis] |
| Swissprot | tr|Q8VZ59|YUC6_ARATH | 5.00E-25 | Indole-3-pyruvate monooxygenase YUCCA6 |
| trEMBL | tr|B9RS61|B9RS61_RICCO | 5.00E-37 | Flavin-containing monooxygenase {ECO:0000256|RuleBase:RU361177} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09464 | 1194 | 1715 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11816 | YUCCA | EC:1.14.13.168 | Tryptophan metabolism | map00380 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.210 |
| SRR1783600 | control | 0.424 |
| SRR1783602 | moderate drought stress | 0.259 |
| SRR1811619 | moderate drought stress | 0.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.247 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.030 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.080 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.478 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.621 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.608 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.418 |
| SRR2967015 | Control (Tissue:root) | 11.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.184 |
| SRR9715740 | Leave | 2.595 |
| SRR9715741 | Leave | 0.812 |
| SRR9715739 | Root | 1.061 |
| SRR9715742 | Root | 1.802 |
| SRR9715743 | Root | 2.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.876 |
| SRR8400027 | Control-Root | 2.218 |