Gene detail information of Glyur009684s00047778.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07900.1 | 1.00E-21 | LOB domain-containing protein 1 |
| NR | AFK47293.1 | 9.89E-66 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9LQR0|LBD1_ARATH | 6.00E-35 | LOB domain-containing protein 1 |
| trEMBL | tr|I3T451|I3T451_LOTJA | 4.00E-66 | Uncharacterized protein {ECO:0000313|EMBL:AFK47293.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09684 | 3 | 353 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur009684s00047778.1 | PF03195.9 | DUF260 | 5 | 58 | 2.50E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.340 |
| SRR1783600 | control | 7.665 |
| SRR1783602 | moderate drought stress | 7.206 |
| SRR1811619 | moderate drought stress | 6.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.079 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.413 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.131 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.343 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.906 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.586 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.792 |
| SRR2967015 | Control (Tissue:root) | 4.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.061 |
| SRR9715740 | Leave | 0.894 |
| SRR9715741 | Leave | 1.207 |
| SRR9715739 | Root | 1.742 |
| SRR9715742 | Root | 0.353 |
| SRR9715743 | Root | 1.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.367 |
| SRR8749028 | MeJA induced 9h | 5.928 |
| SRR8749029 | MeJA induced 9h | 7.923 |
| SRR8749030 | Uninduced | 106.221 |
| SRR8749031 | Uninduced | 32.734 |
| SRR8749032 | Uninduced | 33.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.408 |
| SRR8400027 | Control-Root | 11.656 |