Gene detail information of Glyur009786s00046710.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10150.1 | 5.00E-20 | RING/U-box superfamily protein |
| NR | XP_004506471.1 | 1.47E-31 | PREDICTED: RING-H2 finger protein ATL58-like [Cicer arietinum] |
| Swissprot | tr|Q9SN28|ATL7_ARATH | 8.00E-24 | RING-H2 finger protein ATL7 |
| trEMBL | tr|G7JKP9|G7JKP9_MEDTR | 7.00E-31 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES87565.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold09786 | 1300 | 1680 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur009786s00046710.1 | PF13639.1 | zf-RING_2 | 37 | 79 | 2.20E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.673 |
| SRR1783600 | control | 2.286 |
| SRR1783602 | moderate drought stress | 5.236 |
| SRR1811619 | moderate drought stress | 4.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.118 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.163 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.689 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.501 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.438 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.904 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.988 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.976 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.227 |
| SRR2967015 | Control (Tissue:root) | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.328 |
| SRR9715741 | Leave | 0.159 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.035 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.097 |
| SRR8749029 | MeJA induced 9h | 0.051 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.044 |
| SRR8749032 | Uninduced | 0.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.002 |
| SRR8400027 | Control-Root | 0.000 |