Gene detail information of Glyur010729s00047784.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G61460.18.00E-58brassinosteroid-responsive RING-H2
NRXP_004503686.15.54E-104PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Cicer arietinum]
Swissprottr|Q9SUS5|RHA1B_ARATH2.00E-32E3 ubiquitin-protein ligase RHA1B
trEMBLtr|I3SE74|I3SE74_MEDTR1.00E-99Uncharacterized protein {ECO:0000313|EMBL:AFK38566.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold107297021187-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur010729s00047784.1PF13639.1zf-RING_2851296.40E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.593
SRR1783600control24.637
SRR1783602moderate drought stress22.218
SRR1811619moderate drought stress22.353

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.545
DRR006520Root Summer glycyrrhizin high producing strain35.466
DRR006521Root Winter glycyrrhizin high producing strain7.768
DRR006522Root Winter glycyrrhizin high producing strain8.197
DRR006523Root Summer glycyrrhizin low producing strain15.477
DRR006524Root Summer glycyrrhizin low producing strain16.309
DRR006525Leaf Summer glycyrrhizin high producing strain5.739
DRR006526Leaf Summer glycyrrhizin high producing strain6.134

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.822
SRR2868004Drought Stress(Tissue:root)11.615
SRR2967015Control (Tissue:root)15.056

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.005
SRR9715740Leave4.551
SRR9715741Leave4.306
SRR9715739Root34.025
SRR9715742Root16.765
SRR9715743Root21.710

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.325
SRR8749028MeJA induced 9h6.550
SRR8749029MeJA induced 9h7.687
SRR8749030Uninduced7.138
SRR8749031Uninduced0.357
SRR8749032Uninduced0.795

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.804
SRR8400027Control-Root22.501

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved