Gene detail information of Glyur011487s00046393.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23050.1 | 6.00E-46 | indole-3-acetic acid 7 |
| NR | NP_001241599.1 | 2.92E-72 | uncharacterized protein LOC100803065 [Glycine max] |
| Swissprot | tr|P13089|AUX28_SOYBN | 3.00E-67 | Auxin-induced protein AUX28 |
| trEMBL | tr|I1L897|I1L897_SOYBN | 6.00E-73 | Auxin-induced protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold11487 | 49 | 970 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur011487s00046393.1 | PF02309.11 | AUX_IAA | 6 | 130 | 6.80E-57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.629 |
| SRR1783600 | control | 0.305 |
| SRR1783602 | moderate drought stress | 2.116 |
| SRR1811619 | moderate drought stress | 1.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.169 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.595 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.256 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.522 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.016 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.824 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.317 |
| SRR2967015 | Control (Tissue:root) | 5.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 34.273 |
| SRR9715740 | Leave | 15.799 |
| SRR9715741 | Leave | 10.876 |
| SRR9715739 | Root | 0.118 |
| SRR9715742 | Root | 5.816 |
| SRR9715743 | Root | 4.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 83.293 |
| SRR8749028 | MeJA induced 9h | 55.696 |
| SRR8749029 | MeJA induced 9h | 81.495 |
| SRR8749030 | Uninduced | 2.176 |
| SRR8749031 | Uninduced | 1.906 |
| SRR8749032 | Uninduced | 9.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.865 |
| SRR8400027 | Control-Root | 8.499 |