Gene detail information of Glyur011781s00046718.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G08860.11.00E-49PYRIMIDINE 4
NRACJ85549.13.16E-90unknown [Medicago truncatula]
COGYP_001817512.12.00E-36class III aminotransferase [Opitutus terrae PB90-1]
Swissprottr|Q9SR86|AGT23_ARATH4.00E-58Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial (Precursor)
trEMBLtr|B7FLB5|B7FLB5_MEDTR1.00E-90Putative uncharacterized protein {ECO:0000313|EMBL:ACJ85549.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold117812181170-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00827AGXT2 EC:2.6.1.44 2.6.1.40 Alanine, aspartate and glutamate metabolism map00250
Glycine, serine and threonine metabolismmap00260
Cysteine and methionine metabolismmap00270
Valine, leucine and isoleucine degradationmap00280


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0008483  transaminase activity

GO:0030170  pyridoxal phosphate binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur011781s00046718.1PF00202.16Aminotran_31642386.00E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.958
SRR1783600control10.437
SRR1783602moderate drought stress27.545
SRR1811619moderate drought stress26.263

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.486
DRR006520Root Summer glycyrrhizin high producing strain12.686
DRR006521Root Winter glycyrrhizin high producing strain65.806
DRR006522Root Winter glycyrrhizin high producing strain64.187
DRR006523Root Summer glycyrrhizin low producing strain12.880
DRR006524Root Summer glycyrrhizin low producing strain12.402
DRR006525Leaf Summer glycyrrhizin high producing strain1.297
DRR006526Leaf Summer glycyrrhizin high producing strain1.475

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.774
SRR2868004Drought Stress(Tissue:root)45.650
SRR2967015Control (Tissue:root)43.021

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.317
SRR9715740Leave3.819
SRR9715741Leave8.159
SRR9715739Root7.928
SRR9715742Root23.742
SRR9715743Root21.269

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.150
SRR8749028MeJA induced 9h69.511
SRR8749029MeJA induced 9h16.361
SRR8749030Uninduced10.561
SRR8749031Uninduced5.347
SRR8749032Uninduced32.258

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.568
SRR8400027Control-Root14.174