Gene detail information of Glyur011781s00046718.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G08860.1 | 1.00E-49 | PYRIMIDINE 4 |
NR | ACJ85549.1 | 3.16E-90 | unknown [Medicago truncatula] |
COG | YP_001817512.1 | 2.00E-36 | class III aminotransferase [Opitutus terrae PB90-1] |
Swissprot | tr|Q9SR86|AGT23_ARATH | 4.00E-58 | Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial (Precursor) |
trEMBL | tr|B7FLB5|B7FLB5_MEDTR | 1.00E-90 | Putative uncharacterized protein {ECO:0000313|EMBL:ACJ85549.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold11781 | 218 | 1170 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur011781s00046718.1 | PF00202.16 | Aminotran_3 | 164 | 238 | 6.00E-15 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 10.958 |
SRR1783600 | control | 10.437 |
SRR1783602 | moderate drought stress | 27.545 |
SRR1811619 | moderate drought stress | 26.263 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 14.486 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 12.686 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 65.806 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 64.187 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 12.880 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 12.402 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.297 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.475 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 19.774 |
SRR2868004 | Drought Stress(Tissue:root) | 45.650 |
SRR2967015 | Control (Tissue:root) | 43.021 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 1.317 |
SRR9715740 | Leave | 3.819 |
SRR9715741 | Leave | 8.159 |
SRR9715739 | Root | 7.928 |
SRR9715742 | Root | 23.742 |
SRR9715743 | Root | 21.269 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 21.150 |
SRR8749028 | MeJA induced 9h | 69.511 |
SRR8749029 | MeJA induced 9h | 16.361 |
SRR8749030 | Uninduced | 10.561 |
SRR8749031 | Uninduced | 5.347 |
SRR8749032 | Uninduced | 32.258 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 15.568 |
SRR8400027 | Control-Root | 14.174 |