Gene detail information of Glyur012510s00047848.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G31670.13.00E-39Copper amine oxidase family protein
NRKEH32232.11.96E-75copper amine oxidase, enzyme domain protein [Medicago truncatula]
COGYP_005086886.14.00E-26tyramine oxidase [Pseudovibrio sp. FO-BEG1]
Swissprottr|P49252|AMO_LENCU2.00E-76Primary amine oxidase (Precursor; Fragment)
trEMBLtr|A0A072URB1|A0A072URB1_MEDTR7.00E-76Amine oxidase {ECO:0000256|RuleBase:RU000672}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold12510270635-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00276AOC3, AOC2, tynA EC:1.4.3.21 Glycine, serine and threonine metabolism map00260
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
beta-Alanine metabolismmap00410
Isoquinoline alkaloid biosynthesismap00950
Tropane, piperidine and pyridine alkaloid biosynthesismap00960


Gene Ontology

biological_process

GO:0009308  amine metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005507  copper ion binding

GO:0008131  primary amine oxidase activity

GO:0048038  quinone binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur012510s00047848.1PF01179.15Cu_amine_oxid11161.50E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.437
SRR1783600control14.616
SRR1783602moderate drought stress22.486
SRR1811619moderate drought stress22.160

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.050
DRR006520Root Summer glycyrrhizin high producing strain11.155
DRR006521Root Winter glycyrrhizin high producing strain4.983
DRR006522Root Winter glycyrrhizin high producing strain5.025
DRR006523Root Summer glycyrrhizin low producing strain3.320
DRR006524Root Summer glycyrrhizin low producing strain2.083
DRR006525Leaf Summer glycyrrhizin high producing strain2.032
DRR006526Leaf Summer glycyrrhizin high producing strain2.026

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)197.818
SRR2868004Drought Stress(Tissue:root)70.818
SRR2967015Control (Tissue:root)95.289

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave45.229
SRR9715740Leave0.000
SRR9715741Leave9.152
SRR9715739Root19.115
SRR9715742Root13.856
SRR9715743Root15.592

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.790
SRR8749028MeJA induced 9h1.793
SRR8749029MeJA induced 9h6.907
SRR8749030Uninduced1.694
SRR8749031Uninduced4.038
SRR8749032Uninduced11.604

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.712
SRR8400027Control-Root17.951

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved