Gene detail

Detail information of GWHGAAEX000286/evm.TU.scaffold_0.458

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1060	Vesicle coat complex AP-3, beta subunit
nr	gi\|743841748\|ref\|XP_010937611.1\|	PREDICTED: AP3-complex subunit beta-A [Elaeis guineensis]
Swissprot	tr\|Q9M2T1\|AP3BA_ARATH	AP3-complex subunit beta-A
trEMBL	tr\|M5X762\|M5X762_PRUPE	AP-3 complex subunit beta {ECO:0000256\|PIRNR:PIRNR037096}
TAIR	AT3G55480_2	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000014	21728537	21784526	-

Transcript Sequence
>GWHTAAEX000286 AAATCACATAGGAAGACGACCCATGTTCGAACCCTAAGTGAGCTTAATAAATATAACATTAAAAGAGGATTACAATATATGCTGATGCAGACACATACACCCCAACATAGGAAGACGCGATTTGCTTGAAGGAGAAATGAGCGTAACGAGCGTTTGAATGACAAGTATCACACCACTGACACCATAAATCGAAGGAGAAATGCTGACAAATCGAATGTGAAGCGTTGGTTGAAGTGCAGAAATCACAGATATGATGAGGTTAGGGCTTGGGAGAAGAACGCGCACATAATGCATTGTCTTTAACGGAGATGCTTCCTCAATTCGGGGCGGTGACGGCGGATAGCTTCAGCCGCGCTACCTCTCTTGTCTTGCGGATCGGCACCGACGCTCATCTTTACGACGATCCTGATGACGTTAACATTTCTCATCTCCTTGACAGCCGCTTCGATTCTGAGAAGTGCGAGGCCCTGAAGCGTCTTCTTGCCCTCATCGCACAGGGCGTAGATGTCTGTAACTTCTTCCCTCAGGTAGTGAAGAACGTGGCGTCTAAGTCGTTCGAAGTGAAGAAGCTTGTTTATCTATATTTGCTTCACTACGCGGAGAAGCGCCCCAATGAAGCTTTGCTATCAATTAACTGCTTTCAGAAAGACTTATCCGATCAAAATCCTTTGGTTAGAGCATGGGCACTACGTGCCATGGCTGGAATACATCTACACGTAGTTGCTCCTCTTGTCTTAGCTGCCATCAGAAAGTGCGCTAGGGATCCATCTGCTTATGTCAGAAAATGTGCTGCCAATGCACTTGCTAAGTTACTAGAGTTGCTTCCGGAGGAAAATAATGATCTTGAAGAGTTGGTCAATATGTTCCTGAGTGACCATTCATTTGAAGTAGTTGGAGCTGCTGCAGTTGCTTTCAAAAATGTCTGCCCAAAAAATCTTTCACTTATTGGAAAACACTTTAGAAGACTGTGTGAAGCCCTTCCAGATATTGAAGAGTGGGGCCAGATTTTTCTAATTGAGATACTTTTACGTTATGTAATAGCTAGACATGGACTTGTGAGGGAGTCTATCATGTTCACTTCAAATGATAAATATGGTTTCTATTCCATTCGATCTTCTATTGATCAATCTCATTCATTTGACAATCGTAACAGTTTTACTGAGGATGTTTCCTATAACCTTAAAGTAAATTCGTTGATGTTCAAAAATTACATAGAAGGATGTGAGGAATTTTCATTACTACATCAGTGTACAAATGGAAATGTTGTTGAAGATCAGAATCAGCTAAAGTACATTGTTCCAGAATCCACTGAAAATGATGATGTTAGAATTTTATTGCAATGCACGTTGCCTCTCTTGTGGAGTCAAAATAGCGCAGTTGTGCTTGCCGCTGCTTCTGTTCATTGGATTATGGCCTCAATTGACAAAGTTCAAAGGATTGTAAAGCCAATTCTTTTCCTTCTTAGATCATCTACTGCTTCAAAATATGTGGTGCTTTGTAACATACAGGTGTTTGCCAAGAGACTCCCTTCACTTTTCGAGCATTATTATGAAGATTTTTTTGTACTTAGCTCTGAGTTTTATCAGATTAAAGCTCTTAAACTTGAAATACTCTCTGCCATTGCAACAGATGCATCAATTCAATTCATTTTAGATGAGTTCCAGGATTACATAAAAGATCCAGATAGGAGATTTGTTGCTGATACAGTTGCTGCTATTGGTTTATGTGCTCAAAAGCTACCTTCTGTGATTGATGTTTGCTTGAAGGGGCTATTGGGCCTTGCATCAGAAGAATCATCAATTAACAAAGTTTCCCAGAAGGATGGGGAAGCTTGTATTGTGGTGCAAGCAATCATGTCCATTAGGTTCATAATAAAGCACGATCCATCTAAGCATGAAAAGGTTATTGCAAGATTAGCTCGCAATTTGGATGTGGTTAAGGAATCTGCTGCGCGCTCATTGATTGTATGGATGGTGGGAGAATATTGTTCTATTGGGCAGATAATACCTGAAATAATTCCCACTGTACTGAAGTATCTAGCGTGGTCCTTCACCTCAGAAGTGCTTGAAACAAAGAATCAAATTCTCAACACTGCTGTTAAGGCTGTATTAAGTACCCGAAAAGAGGATAGATTGATTCTAGAGAAGATTTTAAGCCATGTTTTGCAATTGGCAAAATGCGACACAGATTATGACATCCGCGATCGTGCTCGCATGGCTGAGAAATTTGTGTCTTGGCCTGCGGCTGAAGACGGCTCATCCAAACTGCAAAATGGGGTCGCAGCCAACGAGCATTTGAACATCATGTTTAGAGGAAATTCAATTTTCCCTCTATTTTCTGATCAGAATGTTCAATTTTATCTGCCCGGATCGCTATCCCACGTGGTTCTTCATGCAGCTCCTGGTTATGACCCTCTTCCTAGGCCCTGCAGTTTACATGACATTTTGCCTAGCGGAACTGCAGTTGCCGATGATGAAAGTGACTCCAAGTCTTTTGTTGATGAAAGCGATTCCAAGTCTTTTGTTGATGAAAGTGGTTCCTATACTGATTCGGAGGCATCTGACATCAGCTCAGAAGGTGATTCCCATGCTTTATCAAATAATAAACATATTTCTGGAGATAGAACGGAAACTCAAACAAGCCAAGCCGACAACTTGTCCACTTCCATTGTTACTTCAGATCTAGCCGATATAATGATGTCAAGAACAGCATTAGAATCATGGCTTGATGAACATTCTGCTTCACCATCTGCAGCTAAACCAAAGTGTGCGAGAATTTCTGTAAATGATCTTAGTCTCACTGTTTCTCCCATACTTCGCACTCTTCTGGATCCTGTAAAAGGGAAAGGATTGAAAGTGGAGTATTGTTTTTTATCCAGAGCTCTGAAACTCTTCCCATTTCTAGTGTGCATTGAACTACTGTTTTCAAACTGTTCTAATGAGATGATGGAGGGAGTAACTGTGGAAGAAGATGGGGAGCTAAACAAAAGTTCCGAATCTTCTATTCAAGTTCTGGACGGACCTGAAAGCTTGGCTGGCGCTGAGATAGGGTCGACTGTAACTCCAACTGAAGAGATCGCAACGCTGAATTCTGATCAGACAATAAGGAGAACTATTCAGGCTCGGTTTCCCCATCATCTGTTGCCTCTCAAAATGACTGTCCTTTCTGACGGGAGGAGGCATTCTGTGAATCTGTGGCCTGAGATTGGTTATTTCATGAATCCCCTTTCCATGAATACTGCTGCGTTTTCTGAGAAGGAATCAGAGCTGAAGGGAATGTTCGAATGCTCCAAAAGGTGTATGTTTGAAAGCCATCTCAAAGATCTTAAGAGTAACGAGGAGTGGAGTTCATCTGAGGGGACCGATAGCATTCTCGTCGTCGCCCGAAGCCTTGCGTCAAAAGTCCTCAGCCACTCTGACACTTCTCTCGTATCCATTGACATGCCAGTCTCATTTGGGAACGACGATGCCTCGGGTTTGCGTCTACGTTTTAGCGGCGAAATTTTCAGGGTCTCAAAGCCCTGCCTTGTAACCATAGTGGTTGAACAAGGCAGGTGCTCCCAACCGTTAGATGTCATTGTTAAAATCAATTGTGAGGAGACAGTTTTCAGCCTCAATCTCTTGAACAGATTTGTTGCTCTTCTGAATGGAATATAAAGGCTTATTATTAGTGTTTTTCTAAACATTTTCTTCTTGAAAAATATTTGGTGAATTATATGGGCTTGTTTGTGTGTAATAAATAAATATGAACATTTTTATATTTGATTTTTCGTTTTTATTGCAGAAATAAT

Network for GWHGAAEX000286

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01602.19	Adaptin_N	38	642	4.00E-105
PF14796.5	AP3B1_C	837	894	2.00E-06

Protein Sequence

>GWHPAAEX000286
MLPQFGAVTADSFSRATSLVLRIGTDAHLYDDPDDVNISHLLDSRFDSEKCEALKRLLALIAQGVDVCNFFPQVVKNVASKSFEVKKLVYLYLLHYAEKRPNEALLSINCFQKDLSDQNPLVRAWALRAMAGIHLHVVAPLVLAAIRKCARDPSAYVRKCAANALAKLLELLPEENNDLEELVNMFLSDHSFEVVGAAAVAFKNVCPKNLSLIGKHFRRLCEALPDIEEWGQIFLIEILLRYVIARHGLVRESIMFTSNDKYGFYSIRSSIDQSHSFDNRNSFTEDVSYNLKVNSLMFKNYIEGCEEFSLLHQCTNGNVVEDQNQLKYIVPESTENDDVRILLQCTLPLLWSQNSAVVLAAASVHWIMASIDKVQRIVKPILFLLRSSTASKYVVLCNIQVFAKRLPSLFEHYYEDFFVLSSEFYQIKALKLEILSAIATDASIQFILDEFQDYIKDPDRRFVADTVAAIGLCAQKLPSVIDVCLKGLLGLASEESSINKVSQKDGEACIVVQAIMSIRFIIKHDPSKHEKVIARLARNLDVVKESAARSLIVWMVGEYCSIGQIIPEIIPTVLKYLAWSFTSEVLETKNQILNTAVKAVLSTRKEDRLILEKILSHVLQLAKCDTDYDIRDRARMAEKFVSWPAAEDGSSKLQNGVAANEHLNIMFRGNSIFPLFSDQNVQFYLPGSLSHVVLHAAPGYDPLPRPCSLHDILPSGTAVADDESDSKSFVDESDSKSFVDESGSYTDSEASDISSEGDSHALSNNKHISGDRTETQTSQADNLSTSIVTSDLADIMMSRTALESWLDEHSASPSAAKPKCARISVNDLSLTVSPILRTLLDPVKGKGLKVEYCFLSRALKLFPFLVCIELLFSNCSNEMMEGVTVEEDGELNKSSESSIQVLDGPESLAGAEIGSTVTPTEEIATLNSDQTIRRTIQARFPHHLLPLKMTVLSDGRRHSVNLWPEIGYFMNPLSMNTAAFSEKESELKGMFECSKRCMFESHLKDLKSNEEWSSSEGTDSILVVARSLASKVLSHSDTSLVSIDMPVSFGNDDASGLRLRFSGEIFRVSKPCLVTIVVEQGRCSQPLDVIVKINCEETVFSLNLLNRFVALLNGI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12397	AP3B	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0016192	Biological Process	vesicle-mediated transport
GO:0006886	Biological Process	intracellular protein transport
GO:0030123	Cellular Component	AP-3 adaptor complex
GO:0030117	Cellular Component	membrane coat

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.870
SRP064423	SRR2545915	Juvenile tuber	23.150
SRP108465	SRR5643513	five period of Gastrodia elata	16.680
	SRR5643514	five period of Gastrodia elata	21.820
	SRR5643515	five period of Gastrodia elata	18.560
	SRR5643524	five period of Gastrodia elata	19.920
	SRR5643525	five period of Gastrodia elata	20.060
	SRR5643528	five period of Gastrodia elata	16.150
	SRR5643658	five period of Gastrodia elata	22.300
	SRR5643659	five period of Gastrodia elata	13.310
	SRR5643660	five period of Gastrodia elata	15.290
	SRR5643661	five period of Gastrodia elata	13.690
	SRR5643662	five period of Gastrodia elata	14.410
	SRR5643663	five period of Gastrodia elata	14.860
	SRR5643664	five period of Gastrodia elata	14.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.960
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.280
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.670
SRP279888	Gastro	Gastrodia elata tuber	14.97
	Juven	Juvenile tuber	17.98
	Mother_Gastro	Mother tuber of Gastrodia elata	15.91
	Mother_Juven	Mother tuber of Juvenile	15.15