Detail information of GWHGAAEX000358/evm.TU.scaffold_1.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0233 | 2.00E-102 | Vacuolar H+-ATPase V0 sector, subunit c'' |
| nr | gi|695023332|ref|XP_009398829.1| | 1.74E-104 | PREDICTED: V-type proton ATPase subunit c''-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SZY7|VATO1_ARATH | 5.00E-103 | V-type proton ATPase subunit c''1 |
| trEMBL | tr|M0STI3|M0STI3_MUSAM | 1.00E-104 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P30710_001} |
| TAIR | AT4G32530 | 2.00E-102 | ATPase, F0/V0 complex, subunit C protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 1695422 | 1702806 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000358
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00137.20 | ATP-synt_C | 103 | 162 | 9.90E-15 |
| PF00137.20 | ATP-synt_C | 187 | 246 | 2.00E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03661 | ATPeV0B, ATP6F | Metabolic pathways | map01100 |
| Oxidative phosphorylation | map00190 | ||
| Phagosome | map04145 | ||
| Lysosome | map04142 | ||
| Synaptic vesicle cycle | map04721 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:1902600 | Biological Process | hydrogen ion transmembrane transport |
| GO:0015078 | Molecular Function | hydrogen ion transmembrane transporter activity |
| GO:0033179 | Cellular Component | proton-transporting V-type ATPase, V0 domain |
| GO:0033177 | Cellular Component | proton-transporting two-sector ATPase complex, proton-transporting domain |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 88.710 |
| SRR2545915 | Juvenile tuber | 69.140 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 93.970 |
| SRR5643514 | five period of Gastrodia elata | 85.520 | |
| SRR5643515 | five period of Gastrodia elata | 71.920 | |
| SRR5643524 | five period of Gastrodia elata | 74.570 | |
| SRR5643525 | five period of Gastrodia elata | 90.730 | |
| SRR5643528 | five period of Gastrodia elata | 78.730 | |
| SRR5643658 | five period of Gastrodia elata | 78.440 | |
| SRR5643659 | five period of Gastrodia elata | 72.520 | |
| SRR5643660 | five period of Gastrodia elata | 75.580 | |
| SRR5643661 | five period of Gastrodia elata | 72.130 | |
| SRR5643662 | five period of Gastrodia elata | 66.470 | |
| SRR5643663 | five period of Gastrodia elata | 68.480 | |
| SRR5643664 | five period of Gastrodia elata | 78.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 107.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 96.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 119.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 109.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 99.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 104.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 100.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 79.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 86.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 85.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 85.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 88.57 |
| Juven | Juvenile tuber | 128.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 99.79 | |
| Mother_Juven | Mother tuber of Juvenile | 102.63 |