Gene detail

Detail information of GWHGAAEX000696/evm.TU.scaffold_10.67

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3145	2.00E-128	Cystine transporter Cystinosin
nr	gi\|672176133\|ref\|XP_008808137.1\|	3.55E-149	PREDICTED: cystinosin homolog [Phoenix dactylifera]
Swissprot	tr\|P57758\|CTNS_ARATH	6.00E-129	Cystinosin homolog
trEMBL	tr\|I1R5J4\|I1R5J4_ORYGL	5.00E-148	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA12G0080000.1}
TAIR	AT5G40670	2.00E-128	PQ-loop repeat family protein / transmembrane family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000006	3506735	3535293	+

Transcript Sequence
>GWHTAAEX000696 GTTTTTTTCTGAAAGAATTCGAGCTTGATTCCAGTTGCATGGATTAAGCCGTTATGCCGTCCGGATTACTTGAGCGCCAGTCAATTCTTAAGAAAAAAAAAACTTCTTTCTTGGCTTTTTATTGGGAAGAGACGTATGTGCAAAGTTTCATTCAACATCCAGCAATCCAGTAGCTCTTCTAGCTTCTAGGTAGAAAGTAGAGAAAACATAATGGCGCATTGGAATTCCGTCTATCTGGAACTTCCGTACCAGATTCTCGGATGGATCGCCTTCTCCGCCTGGTCAATCAGTTTCTACCCTCAGGTCCTCCTCAACTTCAAACGCAAAAGCGTTGTCGGATTGAACTTCGATTTCCTGGTACTGAATTTAACGAAGCATACTTCATATCTGATCTATAATGCCGCGCTCTTTTTTAGTCCCGAAATCCAGCGGCAATACCATGAAATGTATGGACAAGATGAGATGATTCCTGTAGCAGCCAATGATGTTGCTTTCTCAATACATGCGGTTTTATTGACTGGCTTCACATTGTTCCAGGTTTTGATCTATGAGCGAGGAAATCAAAAGGTCTCAAAGGGCTGCATATTGATCAGTTCTGCCGCATGGGCTACTGCTTTGGTTTGTTTAATTATTGCCTGGCCTAAGCTTTCTTGGCTATGGCTTATTTCCGTGTTCAACACAATACAAGTCATCATGACAGCGATCAAATACATCCCTCAGGCTTTTATGAACTTCAAGCGCAAGAGCACATTGGGATGGAGCATCGGGAATATATTACTTGATTTATCTGGTGGCCTGCTTAACTTTGCCCAGATGGTTGTACAGTCCATAGACCAAAATACATTGGTAAACTTCTACGGCAATATTGGGAAGACCCTACTCTCACTGGAAGTTGTGTTCTTCGACCTCTTCTTCATACTCCAGCATTACGTGCTGTATCCCTTCAACAAGAAAGATGAAGAGGCACAAACGCTTTCTGAAGATTCTAATGCTCCACTTCTCTCCTGACAATTCTAAGGAGCCTGCGTGAGTGAGTAACAGAAGTGATTAAATTTCATTTTACACATTTAAGTGGAATTATTTTCTATCATAATTGTATATGCATCTGTAACGCACGTACATATATGTATGGTTGAGATTAAACCAAATTTGCTTAAAGTACACTCATATTAGAACACAGAATTCATAGTGGTTTGGCCTAAGCAAGTTAATTCATAACGATTGTGAACTTCTGAGCTTCGACTTTCTTCGGGAATGCAAGAGCGAGGATTGTAAGATAACATGAATAATTGGAAAACTTGAGGAAAGAGTAATGATCAAGATTTTGTGGAAGTTGCTCTCTCACTTTTGTAGTTTTTTGTTTTTAAGCTTAATGAAAGGGTTTAGAAAATTGAGTATATTTGAATTTTGCTTATGTTAAAAGAGGAAGAGGAAGATCAAAAAGAGACTGGAAGAAATCATTTGAAAATCATTTCTACTTAGAACTTAGGGAGAGACTTCTATTTGATCATATCATATGGAAACAAAAGGTTTTTTTGTTGACCATGTTATGTATGGAGCTTGATTGGATACGCATATAACGTGTCAATGAAGCCCAGATACAAGTTTTGCCTATGCCAATCAGAAGGCTAAGCACCCAGACACAAGTGGCTAGCGCTGGACAGAGGCTGGCAGTTAAGTTACGAGCAGGCGCAACTTTCTGCAAACGAAGCAACACTTGGAGAAGTTGATACTTTGGAGCCTAAGCGGTTGTGATACAAAGGGAGGTGTCACATTATGATTTAATGTACAGTTATGGCTTGTTCTAAGTTGGGTTCTTAAGCCATTTGTGGTTATTGTTGTGGGATATTTGAGAGTGCATAAGAGAAAAAGAGACGAGTTTTCTTAGAAGATTGGGGCTTAGGTGTGTAATAAAATTTTTAGTGCTGATATTGTCTTCCTCTTCCTACAAGTTTTTCTTATGTATTTTGTAAACCTCATTTTTTTTGTAGATGATTTTTTGTGGTGGTGTGGTTCCAT

Network for GWHGAAEX000696

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04193.13	PQ-loop	14	70	2.50E-18
PF04193.13	PQ-loop	152	209	7.40E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12386	CTNS	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.150
SRP064423	SRR2545915	Juvenile tuber	26.700
SRP108465	SRR5643513	five period of Gastrodia elata	34.530
	SRR5643514	five period of Gastrodia elata	52.310
	SRR5643515	five period of Gastrodia elata	41.610
	SRR5643524	five period of Gastrodia elata	45.770
	SRR5643525	five period of Gastrodia elata	43.740
	SRR5643528	five period of Gastrodia elata	98.100
	SRR5643658	five period of Gastrodia elata	67.420
	SRR5643659	five period of Gastrodia elata	16.910
	SRR5643660	five period of Gastrodia elata	18.670
	SRR5643661	five period of Gastrodia elata	17.440
	SRR5643662	five period of Gastrodia elata	20.500
	SRR5643663	five period of Gastrodia elata	17.110
	SRR5643664	five period of Gastrodia elata	19.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.410
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.660
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	46.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.300
SRP279888	Gastro	Gastrodia elata tuber	27.44
	Juven	Juvenile tuber	21.88
	Mother_Gastro	Mother tuber of Gastrodia elata	152.12
	Mother_Juven	Mother tuber of Juvenile	87.41