Detail information of GWHGAAEX001742/evm.TU.scaffold_112.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|182415397|ref|YP_001820463.1| | 2.00E-92 | Mn2+/Fe2+ transporter [Opitutus terrae PB90-1] |
| KOG | KOG1291 | 0 | Mn2+ and Fe2+ transporters of the NRAMP family |
| nr | gi|743760934|ref|XP_010939679.1| | 0 | PREDICTED: metal transporter Nramp6-like [Elaeis guineensis] |
| Swissprot | tr|Q9C6B2|NRAM2_ARATH | 0 | Metal transporter Nramp2 |
| trEMBL | tr|I1LH97|I1LH97_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G05500.1} |
| TAIR | AT1G47240 | 0 | NRAMP metal ion transporter 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 147224 | 150948 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001742
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01566.17 | Nramp | 107 | 468 | 5.00E-122 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K21398 | SLC11A2, DMT1, NRAMP2 | Lysosome | map04142 |
| Ferroptosis | map04216 | ||
| Mineral absorption | map04978 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030001 | Biological Process | metal ion transport |
| GO:0046873 | Molecular Function | metal ion transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.040 |
| SRR2545915 | Juvenile tuber | 7.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.100 |
| SRR5643514 | five period of Gastrodia elata | 16.130 | |
| SRR5643515 | five period of Gastrodia elata | 11.190 | |
| SRR5643524 | five period of Gastrodia elata | 11.560 | |
| SRR5643525 | five period of Gastrodia elata | 19.960 | |
| SRR5643528 | five period of Gastrodia elata | 22.230 | |
| SRR5643658 | five period of Gastrodia elata | 12.240 | |
| SRR5643659 | five period of Gastrodia elata | 35.330 | |
| SRR5643660 | five period of Gastrodia elata | 39.930 | |
| SRR5643661 | five period of Gastrodia elata | 36.670 | |
| SRR5643662 | five period of Gastrodia elata | 28.510 | |
| SRR5643663 | five period of Gastrodia elata | 29.320 | |
| SRR5643664 | five period of Gastrodia elata | 36.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.33 |
| Juven | Juvenile tuber | 26.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.40 | |
| Mother_Juven | Mother tuber of Juvenile | 4.69 |