Detail information of GWHGAAEX002221/evm.TU.scaffold_119.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|116622194|ref|YP_824350.1| | 6.00E-69 | beta-N-acetylhexosaminidase [Candidatus Solibacter usitatus Ellin6076] |
| KOG | KOG2499 | 0 | Beta-N-acetylhexosaminidase |
| nr | gi|672129500|ref|XP_008788259.1| | 0 | PREDICTED: beta-hexosaminidase 3 [Phoenix dactylifera] |
| Swissprot | tr|Q8L7S6|HEXO3_ARATH | 0 | Beta-hexosaminidase 3 (Precursor) |
| trEMBL | tr|A0A096RZG8|A0A096RZG8_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G121514_P01} |
| TAIR | AT3G55260 | 0 | beta-hexosaminidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000124 | 1116634 | 1148292 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002221
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14845.5 | Glycohydro_20b2 | 26 | 144 | 8.70E-19 |
| PF00728.21 | Glyco_hydro_20 | 169 | 473 | 1.20E-80 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH20 |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004563 | Molecular Function | beta-N-acetylhexosaminidase activity |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.110 |
| SRR2545915 | Juvenile tuber | 7.140 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 101.670 |
| SRR5643514 | five period of Gastrodia elata | 53.110 | |
| SRR5643515 | five period of Gastrodia elata | 50.610 | |
| SRR5643524 | five period of Gastrodia elata | 43.800 | |
| SRR5643525 | five period of Gastrodia elata | 29.960 | |
| SRR5643528 | five period of Gastrodia elata | 21.990 | |
| SRR5643658 | five period of Gastrodia elata | 35.380 | |
| SRR5643659 | five period of Gastrodia elata | 7.360 | |
| SRR5643660 | five period of Gastrodia elata | 9.310 | |
| SRR5643661 | five period of Gastrodia elata | 8.320 | |
| SRR5643662 | five period of Gastrodia elata | 10.840 | |
| SRR5643663 | five period of Gastrodia elata | 12.440 | |
| SRR5643664 | five period of Gastrodia elata | 10.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 124.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 299.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 172.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 63.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 81.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 86.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 51.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 52.870 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 85.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 81.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 360.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 360.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.87 |
| Juven | Juvenile tuber | 10.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.15 | |
| Mother_Juven | Mother tuber of Juvenile | 11.23 |