Gene detail

Detail information of GWHGAAEX003356/evm.TU.scaffold_133.54

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|16081193\|ref\|NP_393486.1\|	8.00E-17	V-type ATP synthase subunit I [Thermoplasma acidophilum DSM 1728]
KOG	KOG2189	0	Vacuolar H+-ATPase V0 sector, subunit a
nr	gi\|743787855\|ref\|XP_010922514.1\|	0	PREDICTED: V-type proton ATPase subunit a1 [Elaeis guineensis]
Swissprot	tr\|Q8RWZ7\|VHAA1_ARATH	0	V-type proton ATPase subunit a1
trEMBL	tr\|D7SKS4\|D7SKS4_VITVI	0	V-type proton ATPase subunit a {ECO:0000256\|RuleBase:RU361189}
TAIR	AT2G28520	0	vacuolar proton ATPase A1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000142	2460102	2510253	+

Transcript Sequence
>GWHTAAEX003356 ATGTGTGTATATATATATATTTATTTTTTATTTTATTTTATTAAAAATTCTTTTTCGTGGCTTCCATTTTCTATCGCTCTTCTGGAGGTCTCCGCATTCCGGATAGGAGAGAGAGAGCGGTCTGGTTCTAATGGCAATTGTGCGAGGCATCACGACCACGGCAATAAGGCTGGACTCATGTTCTTTCTGAACTTCCTTTCTCTCTTCCATATACTTGTCCACAGTTGCCTTGATTTCGCGTCGATGAGGTTCTTTAACGAGTTGCCTCCTATGGATTTCCTCCGCTCAGAGAAGATGAGCTTCGTGCAACTAATAATCCCAGTAGAGTCTGCCAAGAGGGCAATTACCTATCTCGGGGAACTCGGCCTAATCCAATTCAGAGATCTAAATGATGATAAAAGTCCATTTCAGCGAGCATTTGCTAATCAGGTAAAGCGCTGTGGAGAGATGTCACGGAAGCTGAGGTTTTTTAATGATCAGATAAGCAAGTCCAGCATTGCAGTTTTACCTCTCCCTGCTTTGCAACCAGATATTCACTTAGAGGAACTGGAGGTGCATCTATGTGAACATGAGGCTGAACTGTTTGAAATGAATACAAACAGTGAGAAATTGAGACAGACTTATAATGAACTGCTTGAGGTTAAGTTGGTTTTGCAGAAGGCTGGTGACTTTCTTGTTTCAGCGAAAAATCATTCAGTTCCCCCTGAGAGAGAGTTGGATGAAAATGCTTACGCTGCTGAAGATGATGGAGGAACACTATCTTTACTTGAACAGGAAGTTCAGCCTGAACTTTCTAATAAAGCTGGATTGAGATTTATTAGTGGGATAATTTGTAAATCCAAAGCTCTAAAGTTTGAGAGAATGCTCTTTCGAGCTACAAGGGGTAACATGTTATTTCATCATGCCCCAGCTGGAGAACAAGTCACGAATCATTTATCTGGTGAAAAGGAAGAAAAAACTGTCTTTGTAGTATACTTCTCAGGGAAGCAGGCAAAAACTAAAATTCTAAAGATCTGTGATTCATTTGGGGCAAACTGCTATCCTGTTCCTGATGATATTAATAAACAGAAGCAAATCACGAGGGAGGTTTTAACACGTCTATCTGAATTAGAAATCACTTTGGAAGCTGGTCTCCAGCATAGAAACAAAGCATTGGGATCAATTGGTTGCCAACTTTGGAGGTGGACAATGATGGTTAAGAAGGAAAAATCTGTCTATGATACTTTAAATAAGCTCAGTTTTGATGTTACAAAAAAATGCCTTATTGGTGAAGGATGGTGTCCTTCTTTTGCTGAACTGCAGATTAAAGATGCTCTGCAGCGTGCAACAGTTGACAGCAATTCACAGTTGGGGATAATATTTCATGTGATGGATGCCACAGAATCACCTCCAACATATTTTAAAACCAACCGATTTACTAACGCTTTTCAAGAAATCATTGATGCATATGGTGTTGCCAGATATCAGGAGGCAAACCCCTCAGTTTATTCAGTTGTAACATTTCCTTTCCTTTTTGCGGTTATGTTTGGTGATTGGGGCCATGGAATATGCTTGCTGTTTGCAGCACTTGTCCTTATACTTCGTGAACACAAACTTGGATCTCAGAAACTAGGCAGCTTCATGGAGATGGCATTTGGTGGGCGCTATGTTATACTTCTAATGGCTTTATTTTCAATTTACTGTGGTTTGATCTATAATGAGTTTTTCTCTATCCCATATCATATATTTGGTCCATCTGCTTATAAATGTCGAGACCCAAGTTGTCGTGATGCACACATTGCTGGGCTTATAAAGTATCGTGAACCATATAAGTTTGGGGTGGACCCGAGTTGGCGAGGCAGTCGATCTGAGCTTCCATTTCTAAATTCATTGAAGATGAAGATGTCTATATTGCTGGGACTTTCTCAGATGAATTTGGGACTTATGTTAAGCTACTTTGATGCTAAGTTGCATGGGAACTCCCTAGATATAAGGTACCAATTTGTGCCACAGATGATATTTCTCAACAGCCTCTTCGGTTATTTGGCACTCCTTATTGTTGTCAAGTGGTGCACTGGATCAAAGGCTGATCTTTATCATGTGATGATATATATGTTCTTGAGTCCCACTGACAATCTTGGTGAAAATCAATTATTTTGGGGACAGAAAACCTTGCAGATCTTGCTATTGCTTATGGCAATTGTTGCAGTTCCATGGATGCTATTTCCCAAACCTTTCTTCTTACGAAAGCTCCATGTTGAGAGATTCCAAGGTCGCTCCTACGGGATCCTTCGAACCTCGGACACCGACATTGATGTTGAACTCAATTCCGCCAATGAAAGCCTCAGTGAATTCAACTTCAGCGAGGTGTTTGTGCATCAGATGATACATTCCATTGAATTTGTCTTGGGTGCAGTCTCGAATACTGCTTCCTATCTTCGGCTATGGGCGCTAAGTTTGGCGCACTCAGAGCTATCAACTGTTTTCTATGAGAAAATACTACTTCTTTCTTGGGGGTACAACAGCTTCATAATTCGGTTAGTTGGGCTTGCCGTTTTTGCGTTCGCGACAGCATTCATACTGCTGATGATGGAAACGTTGAGCGCATTTCTTCATGCCCTTCGCCTTCATTGGGTCGAATTCATGGGCAAGTTCTACCACGGCGATGGCTACAAATTCAGGCCGTTCTCGTTTGCCTCTTTGGCCGGCGACAACGAAGAATGATCGGTAGACGGCGATTCCTGCATGCGGGCCCCTTGGGAAAAGTCAATAGAGAATTTGTGGCTGAAGGAAAGTGCTTTCCAAAATTTGCATTCCCACCCACTGACCGGCCCGGATCAGTCTTATTTGCATTTGTGAAATTGTGGACTATACTTGGCAGTTTTGGCACGAGCAAAGCAGCTGAACGCCGCCATTTTTTAAGAGATGATTTCAAATACCGGGTAATTAAAGAGGGCATCTTATTAAAAAGATGCCAATAGAAATATCTACTCTTCTTTACACTTTGTTCTTTTTCCTGTAGGGTTGAGTTTTGTTTGACAACCATAAGGTTTCTCATACTACTGTTTTGTTTTACTAAAAATAGCATTATTTTTCATTATTCATTGTTATGTGGCAATAATGTCCGAAAACTGTTGTTTTCTGTTTTCTTTTTCTTGGGGGATAATTACTTGTCTTGCACCCAAATCTTTATTTGCATATCAAACACACGAATCTTTATATATATTCCCAATACATCATCATATCTCTTGTATAATATTGTATCTGTTAGTAGTTTTGATGCATTATTAAGAATTCTG

Network for GWHGAAEX003356

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01496.18	V_ATPase_I	117	891	2.30E-279

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02154	ATPeV0A, ATP6N	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Phagosome	map04145
		Lysosome	map04142
		Collecting duct acid secretion	map04966
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:1902600	Biological Process	hydrogen ion transmembrane transport
GO:0015078	Molecular Function	hydrogen ion transmembrane transporter activity
GO:0000220	Cellular Component	vacuolar proton-transporting V-type ATPase, V0 domain
GO:0033179	Cellular Component	proton-transporting V-type ATPase, V0 domain

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	64.990
SRP064423	SRR2545915	Juvenile tuber	42.410
SRP108465	SRR5643513	five period of Gastrodia elata	25.890
	SRR5643514	five period of Gastrodia elata	22.720
	SRR5643515	five period of Gastrodia elata	25.150
	SRR5643524	five period of Gastrodia elata	26.070
	SRR5643525	five period of Gastrodia elata	40.410
	SRR5643528	five period of Gastrodia elata	35.900
	SRR5643658	five period of Gastrodia elata	44.690
	SRR5643659	five period of Gastrodia elata	28.150
	SRR5643660	five period of Gastrodia elata	30.120
	SRR5643661	five period of Gastrodia elata	27.950
	SRR5643662	five period of Gastrodia elata	32.630
	SRR5643663	five period of Gastrodia elata	33.380
	SRR5643664	five period of Gastrodia elata	35.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.660
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.800
SRP279888	Gastro	Gastrodia elata tuber	38.47
	Juven	Juvenile tuber	30.56
	Mother_Gastro	Mother tuber of Gastrodia elata	24.37
	Mother_Juven	Mother tuber of Juvenile	36.94