Gene detail

Detail information of GWHGAAEX003570/evm.TU.scaffold_138.51

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|325282171\|ref\|YP_004254713.1\|	2.00E-22	Legumain [Odoribacter splanchnicus DSM 220712]
KOG	KOG1348	0	Asparaginyl peptidases
nr	gi\|743755465\|ref\|XP_010911246.1\|	0	PREDICTED: vacuolar-processing enzyme [Elaeis guineensis]
Swissprot	tr\|O24325\|VPE1_PHAVU	0	Vacuolar-processing enzyme (Precursor)
trEMBL	tr\|M0TD17\|M0TD17_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P35740_001}
TAIR	AT4G32940	0	gamma vacuolar processing enzyme

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000143	1527986	1531582	-

Transcript Sequence
>GWHTAAEX003570 AGGGAGAGCTTATAAAAAGGGCGGGCTCTGCTCCGCTTACCTCACTGCTACGACTTATCGTTTTATCGGATAATTTCGGGCGATACGTTCCGAAATATGGCCCGACACAAATCTCTCCTCGCCCTCTTGTTGCCCCTCGTACTGGCAAGCGCCCGCTGGGATCCGCTCCTTCGGTTGCCGTCCGACGGTGTGGATGAAGCCGTTGGAACGAGATGGGCGGTCCTGATTGCCGGTTCAAGAGGCTTCGGTAATTATCGCCATCAGGCTGATGTCTGCCATGCTTACCAAGTGATGAAAAATGGCGGGTTGAAAGATGAGAATATCATAGTTTTCATGTACGATGACATTGCTTACAACAGAGAAAACCCCGCAGCAGGAATCATAATTAACAATCCTCGAGGTCAGAATGTATACGTCGGAGTTCCCAAGGACTACGTCGGAGAAGATGTAAATGTCAACAACTTCTTCGCTGCTATTATGGGAAACAAGAGCGCTTTAACAGGGGGGAGTGGCAAAGTTGTTAATAGCGAACCCGATGATCATATTTTCATATTTTATTCTGATCATGGCGGGCCTGGAGTTCTTGGAATGCCAACCCGCCCGAGCCTCTATGCTAATGATTTCATCAACCTGCTGAAGGAGAAACATGCTTTAAATTCCTACAAAAGCATGACAATTTATGTCGAGGCTTGCGAATCAGGAAGCATTTTTGAGGGCCTTCTACCTGAAAATATCAACATTTATGCGACCACAGCATCAAATGCACGTGAAAGTAGTTGGGGAACTTACTGCCCTTATGACATTCCTGGTCCTCCTCCACAGTATTGGACTTGTTTGGGAGACTTGTACAGCATAGCATGGATGGAGGATAGTGACATACATAATCTGAGGACAGAAACTCTGAATCAACAATATCAATTAGTGAAAGTAAGGACTTCCATTGATGATACATATCAATCTGGCTCGCATGTCATGCAATATGGAGATTTGAATCTCAACATGAAACTACTATATTTGTACATGGGCTCAAATCCTGCTAACGTCAATCACACTTTTGTCGAGCAAAACTTTTTAGCGTCAAAATCAGCTACCGTGAACCAACGTGATGCAGACCTCCTTTATTATTGGCACAAGTTCCATAACTCAAATGAAGGATCTTTGGAAAAGCTAAATGCTCAAAGAGATCTTCTGGAGATAATGTCTCATCGGATGCATGTAGATAATAGTGTAAGCCTCATTGGGAAGATCCTTTTTGGAACAACAAAACAGGAGGATATTTTGAATGTAATTAGACCAACAGGGCATCCATTGGTTGATGATTGGAAATGTCTCAAGTCAATGGTTCGTTCTTTTGAAACTCATTGTGGATCTCTTTCCCAATATGGTCTCAAACACATGCGCTCTTTCGCAAACATTTGTAATGCTGGTGTTAATGAGCAAATGATGGAAAAGGTGTTAGTTGAAGTGTGCCCTCAAGTTCCATACAATGTATGGAGTTCTCTTGATGGTGGCCTTAGTGCTTGAGATGGGATAGTTTCTTAAGAAAATATATGTTATTTCTTATTAATAGAATGTATTCCTTGTAAATAAGGTGATAGTTTGCTTTTGGTAGCATAGTAAGGATCTTTAACTCAATTATAAAAGTTATAGTTATCAAGTGAAATTGCTTAAATTCATGAAGTGCTACTCCATAAATGATTGTATAGTCATTCTTTGGGATTCATGATTTGATTGTGTGTTGATAAATACATATATACATGTATGATTACTCACCTTGCTAATACATAAAACTTATGTTAGA

Network for GWHGAAEX003570

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module14

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01650.17	Peptidase_C13	39	310	4.00E-107

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01369	LGMN	Lysosome	map04142
K01369	LGMN	Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0008233	Molecular Function	peptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	204.380
SRP064423	SRR2545915	Juvenile tuber	37.650
SRP108465	SRR5643513	five period of Gastrodia elata	6.390
	SRR5643514	five period of Gastrodia elata	124.920
	SRR5643515	five period of Gastrodia elata	59.380
	SRR5643524	five period of Gastrodia elata	78.830
	SRR5643525	five period of Gastrodia elata	25.040
	SRR5643528	five period of Gastrodia elata	88.280
	SRR5643658	five period of Gastrodia elata	12.360
	SRR5643659	five period of Gastrodia elata	0.510
	SRR5643660	five period of Gastrodia elata	0.360
	SRR5643661	five period of Gastrodia elata	0.760
	SRR5643662	five period of Gastrodia elata	1.100
	SRR5643663	five period of Gastrodia elata	0.270
	SRR5643664	five period of Gastrodia elata	1.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.030
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.700
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	71.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.140
SRP279888	Gastro	Gastrodia elata tuber	0.68
	Juven	Juvenile tuber	1.15
	Mother_Gastro	Mother tuber of Gastrodia elata	551.16
	Mother_Juven	Mother tuber of Juvenile	56.43