Detail information of GWHGAAEX004471/evm.TU.scaffold_15.82


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG09850Vesicle coat protein clathrin, heavy chain
nrgi|743875760|ref|XP_010907410.1|0PREDICTED: clathrin heavy chain 1-like [Elaeis guineensis]
Swissprottr|Q2RBN7|CLH1_ORYSJ0Clathrin heavy chain 1
trEMBLtr|I1MZ13|I1MZ13_SOYBN0Clathrin heavy chain {ECO:0000256|PIRNR:PIRNR002290}
TAIRAT3G111300Clathrin, heavy chain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001914494561474519-
Transcript Sequence

Network for GWHGAAEX004471

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01394.19Clathrin_propel20557.60E-06
PF01394.19Clathrin_propel1561971.90E-09
PF09268.9Clathrin-link3443672.70E-09
PF13838.5Clathrin_H_link3694342.40E-30
PF00637.19Clathrin5556904.80E-22
PF00637.19Clathrin7018403.40E-20
PF00637.19Clathrin8509838.80E-29
PF00637.19Clathrin99311317.10E-31
PF00637.19Clathrin115112811.50E-27
PF00637.19Clathrin129314313.30E-28
PF00637.19Clathrin143915793.30E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04646CLTC Endocytosis map04144
Lysosomemap04142
Endocrine and other factor-regulated calcium reabsorptionmap04961
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName
GO:0016192Biological Processvesicle-mediated transport
GO:0006886Biological Processintracellular protein transport
GO:0005198Molecular Functionstructural molecule activity
GO:0005515Molecular Functionprotein binding
GO:0032051Molecular Functionclathrin light chain binding
GO:0071439Cellular Componentclathrin complex
GO:0030130Cellular Componentclathrin coat of trans-Golgi network vesicle
GO:0030132Cellular Componentclathrin coat of coated pit

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms108.410
SRR2545915Juvenile tuber109.690
SRP108465SRR5643513five period of Gastrodia elata89.850
SRR5643514five period of Gastrodia elata83.890
SRR5643515five period of Gastrodia elata93.990
SRR5643524five period of Gastrodia elata87.950
SRR5643525five period of Gastrodia elata110.580
SRR5643528five period of Gastrodia elata123.380
SRR5643658five period of Gastrodia elata100.310
SRR5643659five period of Gastrodia elata136.110
SRR5643660five period of Gastrodia elata139.450
SRR5643661five period of Gastrodia elata135.580
SRR5643662five period of Gastrodia elata139.460
SRR5643663five period of Gastrodia elata143.610
SRR5643664five period of Gastrodia elata149.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_197.980
SRR6049655Rhizomagastrodiae_C368-T10_good_195.790
SRR6049656Rhizomagastrodiae_C368-T07_good_1101.380
SRR6049657Rhizomagastrodiae_C368-T07_good_192.000
SRR6049658Rhizomagastrodiae_C368-T04_good_1109.990
SRR6049659Rhizomagastrodiae_C368-T04_good_1105.870
SRR6049660Rhizomagastrodiae_C368-T01_good_191.220
SRR6049661Rhizomagastrodiae_C368-T04_good_1108.170
SRR6049662Rhizomagastrodiae_C368-T01_good_1113.690
SRR6049663Rhizomagastrodiae_C368-T01_good_1100.850
SRR6049664Rhizomagastrodiae_C368-T10_good_1102.450
SRR6049665Rhizomagastrodiae_C368-T10_good_1102.450
SRP279888GastroGastrodia elata tuber 175.14
JuvenJuvenile tuber196.77
Mother_GastroMother tuber of Gastrodia elata 131.82
Mother_JuvenMother tuber of Juvenile 216.70