Detail information of GWHGAAEX004821/evm.TU.scaffold_154.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0934 | 5.00E-106 | Clathrin adaptor complex, small subunit |
| nr | gi|406657700|gb|AFS50008.1| | 1.69E-110 | AP-1 complex subunit sigma-2-like protein [Dendrobium catenatum] |
| Swissprot | tr|Q8LEZ8|AP1S1_ARATH | 4.00E-107 | AP-1 complex subunit sigma-1 |
| trEMBL | tr|J9Z4N7|J9Z4N7_9ASPA | 6.00E-111 | AP-1 complex subunit sigma-2-like protein {ECO:0000313|EMBL:AFS50008.1} |
| TAIR | AT4G35410 | 5.00E-106 | Clathrin adaptor complex small chain family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000163 | 1697568 | 1726234 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004821
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01217.19 | Clat_adaptor_s | 1 | 140 | 9.20E-56 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12394 | AP1S1_2 | Lysosome | map04142 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015031 | Biological Process | protein transport |
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0030117 | Cellular Component | membrane coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.900 |
| SRR2545915 | Juvenile tuber | 40.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 29.010 |
| SRR5643514 | five period of Gastrodia elata | 28.680 | |
| SRR5643515 | five period of Gastrodia elata | 29.930 | |
| SRR5643524 | five period of Gastrodia elata | 32.540 | |
| SRR5643525 | five period of Gastrodia elata | 34.190 | |
| SRR5643528 | five period of Gastrodia elata | 30.910 | |
| SRR5643658 | five period of Gastrodia elata | 32.650 | |
| SRR5643659 | five period of Gastrodia elata | 37.930 | |
| SRR5643660 | five period of Gastrodia elata | 44.110 | |
| SRR5643661 | five period of Gastrodia elata | 43.900 | |
| SRR5643662 | five period of Gastrodia elata | 34.250 | |
| SRR5643663 | five period of Gastrodia elata | 34.630 | |
| SRR5643664 | five period of Gastrodia elata | 28.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 34.76 |
| Juven | Juvenile tuber | 28.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 30.68 | |
| Mother_Juven | Mother tuber of Juvenile | 31.74 |