Detail information of GWHGAAEX005312/evm.TU.scaffold_161.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|374311440|ref|YP_005057870.1| | 8.00E-64 | beta-N-acetylhexosaminidase [Granulicella mallensis MP5ACTX8] |
| KOG | KOG2499 | 0 | Beta-N-acetylhexosaminidase |
| nr | gi|672166975|ref|XP_008803429.1| | 0 | PREDICTED: beta-hexosaminidase 2-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SYK0|HEXO2_ARATH | 0 | Beta-hexosaminidase 2 (Precursor) |
| trEMBL | tr|B4FYZ2|B4FYZ2_MAIZE | 0 | Beta-hexosaminidase {ECO:0000256|PIRNR:PIRNR001093} |
| TAIR | AT1G05590 | 0 | beta-hexosaminidase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000166 | 271572 | 275824 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005312
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14845.5 | Glycohydro_20b2 | 29 | 140 | 8.10E-08 |
| PF00728.21 | Glyco_hydro_20 | 164 | 516 | 1.70E-92 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH20 |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004563 | Molecular Function | beta-N-acetylhexosaminidase activity |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.410 |
| SRR2545915 | Juvenile tuber | 0.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.980 |
| SRR5643514 | five period of Gastrodia elata | 4.230 | |
| SRR5643515 | five period of Gastrodia elata | 2.310 | |
| SRR5643524 | five period of Gastrodia elata | 2.230 | |
| SRR5643525 | five period of Gastrodia elata | 9.470 | |
| SRR5643528 | five period of Gastrodia elata | 3.050 | |
| SRR5643658 | five period of Gastrodia elata | 6.950 | |
| SRR5643659 | five period of Gastrodia elata | 0.790 | |
| SRR5643660 | five period of Gastrodia elata | 0.670 | |
| SRR5643661 | five period of Gastrodia elata | 0.880 | |
| SRR5643662 | five period of Gastrodia elata | 1.830 | |
| SRR5643663 | five period of Gastrodia elata | 0.970 | |
| SRR5643664 | five period of Gastrodia elata | 2.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.830 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.79 |
| Juven | Juvenile tuber | 1.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.58 | |
| Mother_Juven | Mother tuber of Juvenile | 3.91 |