Detail information of GWHGAAEX006201/evm.TU.scaffold_178.85
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|325282171|ref|YP_004254713.1| | 2.00E-27 | Legumain [Odoribacter splanchnicus DSM 220712] |
| KOG | KOG1348 | 0 | Asparaginyl peptidases |
| nr | gi|695070617|ref|XP_009382344.1| | 0 | PREDICTED: legumain-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P49042|VPE_RICCO | 0 | Vacuolar-processing enzyme (Precursor) |
| trEMBL | tr|M0RP56|M0RP56_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P03760_001} |
| TAIR | AT1G62710 | 0 | beta vacuolar processing enzyme |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000197 | 1822231 | 1825387 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006201
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01650.17 | Peptidase_C13 | 44 | 315 | 8.90E-110 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01369 | LGMN | Lysosome | map04142 |
| Antigen processing and presentation | map04612 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0008233 | Molecular Function | peptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.280 |
| SRR2545915 | Juvenile tuber | 0.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.300 |
| SRR5643514 | five period of Gastrodia elata | 0.940 | |
| SRR5643515 | five period of Gastrodia elata | 0.790 | |
| SRR5643524 | five period of Gastrodia elata | 1.180 | |
| SRR5643525 | five period of Gastrodia elata | 0.810 | |
| SRR5643528 | five period of Gastrodia elata | 1.590 | |
| SRR5643658 | five period of Gastrodia elata | 2.110 | |
| SRR5643659 | five period of Gastrodia elata | 0.340 | |
| SRR5643660 | five period of Gastrodia elata | 0.370 | |
| SRR5643661 | five period of Gastrodia elata | 0.570 | |
| SRR5643662 | five period of Gastrodia elata | 0.420 | |
| SRR5643663 | five period of Gastrodia elata | 0.320 | |
| SRR5643664 | five period of Gastrodia elata | 0.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.97 |
| Juven | Juvenile tuber | 0.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.39 | |
| Mother_Juven | Mother tuber of Juvenile | 0.12 |