Detail information of GWHGAAEX007134/evm.TU.scaffold_198.18
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1061 | 0 | Vesicle coat complex AP-1/AP-2/AP-4, beta subunit |
| nr | gi|695077071|ref|XP_009385856.1| | 0 | PREDICTED: beta-adaptin-like protein B [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O81742|APBLC_ARATH | 0 | Beta-adaptin-like protein C |
| trEMBL | tr|M0U680|M0U680_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP04180_001} |
| TAIR | AT4G23460 | 0 | Adaptin family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000201 | 539072 | 566967 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007134
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01602.19 | Adaptin_N | 15 | 533 | 6.40E-158 |
| PF09066.9 | B2-adapt-app_C | 789 | 898 | 3.40E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12392 | AP1B1 | Lysosome | map04142 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015031 | Biological Process | protein transport |
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0030276 | Molecular Function | clathrin binding |
| GO:0030131 | Cellular Component | clathrin adaptor complex |
| GO:0030117 | Cellular Component | membrane coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 50.010 |
| SRR2545915 | Juvenile tuber | 52.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 56.400 |
| SRR5643514 | five period of Gastrodia elata | 59.760 | |
| SRR5643515 | five period of Gastrodia elata | 63.440 | |
| SRR5643524 | five period of Gastrodia elata | 64.410 | |
| SRR5643525 | five period of Gastrodia elata | 46.750 | |
| SRR5643528 | five period of Gastrodia elata | 52.890 | |
| SRR5643658 | five period of Gastrodia elata | 65.480 | |
| SRR5643659 | five period of Gastrodia elata | 59.980 | |
| SRR5643660 | five period of Gastrodia elata | 56.230 | |
| SRR5643661 | five period of Gastrodia elata | 57.900 | |
| SRR5643662 | five period of Gastrodia elata | 59.780 | |
| SRR5643663 | five period of Gastrodia elata | 57.700 | |
| SRR5643664 | five period of Gastrodia elata | 55.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 48.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 68.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 51.170 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 43.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 45.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 57.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 52.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 64.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 64.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 45.79 |
| Juven | Juvenile tuber | 63.97 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 82.29 | |
| Mother_Juven | Mother tuber of Juvenile | 73.86 |