Detail information of GWHGAAEX008577/evm.TU.scaffold_223.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|387791448|ref|YP_006256513.1| | 9.00E-18 | cysteine protease [Solitalea canadensis DSM 3403] |
| KOG | KOG1543 | 3.00E-163 | Cysteine proteinase Cathepsin L |
| nr | gi|586679337|ref|XP_006840260.1| | 0 | hypothetical protein AMTR_s00045p00036790 [Amborella trichopoda] |
| Swissprot | tr|Q40143|CYSP3_SOLLC | 2.00E-26 | Cysteine proteinase 3 (Precursor) |
| trEMBL | tr|W1P4Q2|W1P4Q2_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN01935.1} |
| TAIR | AT4G01610 | 3.00E-163 | Cysteine proteinases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000222 | 316933 | 376636 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008577
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08127.12 | Propeptide_C1 | 41 | 81 | 8.70E-10 |
| PF00112.22 | Peptidase_C1 | 130 | 348 | 3.70E-61 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0050790 | Biological Process | regulation of catalytic activity |
| GO:0004197 | Molecular Function | cysteine-type endopeptidase activity |
| GO:0008234 | Molecular Function | cysteine-type peptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 369.540 |
| SRR2545915 | Juvenile tuber | 336.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 183.190 |
| SRR5643514 | five period of Gastrodia elata | 129.680 | |
| SRR5643515 | five period of Gastrodia elata | 152.170 | |
| SRR5643524 | five period of Gastrodia elata | 140.780 | |
| SRR5643525 | five period of Gastrodia elata | 442.810 | |
| SRR5643528 | five period of Gastrodia elata | 546.490 | |
| SRR5643658 | five period of Gastrodia elata | 452.550 | |
| SRR5643659 | five period of Gastrodia elata | 147.080 | |
| SRR5643660 | five period of Gastrodia elata | 163.400 | |
| SRR5643661 | five period of Gastrodia elata | 161.080 | |
| SRR5643662 | five period of Gastrodia elata | 162.210 | |
| SRR5643663 | five period of Gastrodia elata | 164.130 | |
| SRR5643664 | five period of Gastrodia elata | 168.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 156.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 157.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 154.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 194.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 188.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 225.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 169.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 207.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 124.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 111.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 138.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 138.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 146.62 |
| Juven | Juvenile tuber | 139.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 443.17 | |
| Mother_Juven | Mother tuber of Juvenile | 389.76 |