Gene detail

Detail information of GWHGAAEX008720/evm.TU.scaffold_229.11

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0937	Adaptor complexes medium subunit family
nr	gi\|743801483\|ref\|XP_010926361.1\|	PREDICTED: AP-4 complex subunit mu-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9SB50\|AP4M_ARATH	AP-4 complex subunit mu
trEMBL	tr\|C5X2G3\|C5X2G3_SORBI	Putative uncharacterized protein Sb02g039530 {ECO:0000313\|EMBL:EER97557.1}
TAIR	AT4G24550	Clathrin adaptor complexes medium subunit family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000225	668107	711447	+

Transcript Sequence
>GWHTAAEX008720 ATTAGATTTACATAAAGGCATCTCAAACAAGCTGAGAGCGGAGCAGGGAAGCTATTCCGTCGTCTGGCGAGAGAAGCCTCCGCAGACAGTCCACGCGCCGATCTCAGTGATGATCTCGCAATTTTTCATCCTCTCTCAGAGAGGTGACAACATCGTTTTCCGAGATTATCGAGGTGAAGTTCCAAAAGGTAGTGCGGAGATATTCTTTCGTAAAGTGAAGTTTTGGAAAGAGGATGAAGTAGAGGAAGCACCACCAGTCTTTAATGTGAATGGAGTTAATTACATTCATGCAAAGGTAGCAGGATTGATGTTTGTTGCCACCACTAGAGTAAATGTTTCACCATCTCTTGTTTTGGAGCTTCTTCAAAGGATAGCACGTGTAATCAAAGATTACCTTGGGGTTCTTAATGAAGATTCATTGCGCAAAAATTTTGTTCTTGTATATGAATTGCTTGATGAAGTCATTGATTTTGGTTATCCACAAATGACGTCTACAGAAGTTCTCAAGTCATATGTATTTAATGAACCAATTGTTGTTGATTCTTCACGTATGCCTCCTCTTGGCCCAGCTGCGATGTTTATGCAAAGTACTAAAAGGATGCCCGGCACTGCTATTACAAAATCTGTTGTCGCCAATGAACCTGGTGGTAGGAAGAGGGATGAGATATTTGTAGATATTATCGAAAAAATAAGTGTCACGTTCAGTTCTAGCGGCTACATACTTACTTCTGAGGTTGATGGAACTATTCAAATGAAAAGTTACCTCAGCGGAAATCCAGATATACGACTAGCTCTTAATGAGGATTTGAGCATTGGAAGAAATGTTGGAAACTCTATGTATGATTATAGAAGTTCTGGTGGAGGAGGAGCGGTGATCCTTGATGATTGTAACTTCCATGAATCTGTGCATCTTGATAATTTTGATTTAGATAGAACTTTGACTTTGGTGCCACCTGATGGGGAATTTTCTGTCATGAACTACCGAATGACTCAAGAATTCAAGCCTCCTTTTTGCATCAATGCATTAATTGAAGAAGCTGGACCATTCAAGGCTGATGTCATTATTAAAATCCGTGCTGATTTTTCATCAAGTGTCACTGCAAATACAATTACAGTGCACATGCCTGTTCCAAAATATATAGCAAGAGTTAGCTTTGAACATGAACCTGGAGCGATTGGGCAAGCAACTGACTTTAAGGAAATGAACAAGAGGTTAGAATGGAGTTTAAATAAGATTGTTGGAGGTGCTGAACACACGTTACGAGCAAAGCTTACATTTTCACAGGAATCACATGGGAATTTGACAAAGGAAGCAGGGCCCGTTAGTATGAATTTCACCATCCCCATGTATAATGCTTCTAGGCTTCAGGTAAGATATCTGCACATAACCAAGAAATCGAAGGCCCACAATCCTTATCGATGGGTTAGATATGTGACGCAAGCTAATTCTTATGTAGCACGCTTATAGGCATCTCAGCCTTTTCCTTGGCATCGTTGATAAGATAATGTGAAATTCCCAAGGTCGTGGCAACCTGTATATTCTTACTTGTATTCTTGCTTGCTTGAATGGAGGATGGAATAATAAGTTGGATGTTTATGAAGTTTTGTTTACTTGGGATGTTTCTTACGTACTTTATTCTTATTCTTGGCATCACCAGTAAAATGGAGAAGTTAAGATGAATAAGTGGGCATAAATAAAAGGATATGATATTAAGTGTGCTTAATTGTAATAAGGTTGAAGTTGCTCATTTGATGTTAAGCTCCAAGAAAGGTAATTTATATAGTTTGGATATATCAAATTCATGTCTAATTGAAGTTTTCCTTAGCTTAACTTTGTTTAAATGTGAATCAAATATTTCTAGTTTAAGTTTACTTTGTGTAATTTATTAATGATATACTTATAATGTAAGGGGTTTATTAATAATGTATTGAGTATATTTGAACCATCAATATGTCAA

Network for GWHGAAEX008720

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01217.19	Clat_adaptor_s	1	129	1.40E-05
PF00928.20	Adap_comp_sub	182	451	1.50E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12402	AP4M1	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0006886	Biological Process	intracellular protein transport
GO:0016192	Biological Process	vesicle-mediated transport
GO:0030131	Cellular Component	clathrin adaptor complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.910
SRP064423	SRR2545915	Juvenile tuber	67.550
SRP108465	SRR5643513	five period of Gastrodia elata	57.320
	SRR5643514	five period of Gastrodia elata	65.200
	SRR5643515	five period of Gastrodia elata	57.780
	SRR5643524	five period of Gastrodia elata	65.840
	SRR5643525	five period of Gastrodia elata	61.150
	SRR5643528	five period of Gastrodia elata	51.470
	SRR5643658	five period of Gastrodia elata	60.820
	SRR5643659	five period of Gastrodia elata	51.360
	SRR5643660	five period of Gastrodia elata	56.580
	SRR5643661	five period of Gastrodia elata	53.340
	SRR5643662	five period of Gastrodia elata	55.320
	SRR5643663	five period of Gastrodia elata	56.330
	SRR5643664	five period of Gastrodia elata	55.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	59.030
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	79.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	61.850
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	67.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	57.200
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	74.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	59.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	66.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	54.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	54.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	57.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	57.600
SRP279888	Gastro	Gastrodia elata tuber	60.57
	Juven	Juvenile tuber	57.59
	Mother_Gastro	Mother tuber of Gastrodia elata	44.98
	Mother_Juven	Mother tuber of Juvenile	52.79