Gene detail

Detail information of GWHGAAEX009294/evm.TU.scaffold_241.37

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3145	1.00E-124	Cystine transporter Cystinosin
nr	gi\|743814342\|ref\|XP_010930005.1\|	3.09E-147	PREDICTED: cystinosin homolog [Elaeis guineensis]
Swissprot	tr\|P57758\|CTNS_ARATH	3.00E-125	Cystinosin homolog
trEMBL	tr\|I1IT93\|I1IT93_BRADI	2.00E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI4G39150.1}
TAIR	AT5G40670	1.00E-124	PQ-loop repeat family protein / transmembrane family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000238	705253	712797	+

Transcript Sequence
>GWHTAAEX009294 CGGCAGGCATGGCATGTCACACCCGCGCTACACCTCACGCCAAACACATGTTCGGCTCCCTTCAAGCTTCATCAGCTTCGTTAGTTGCAAAATCGATCTTGCTTGATTTGTGGATCCAGCTTTGCCCTTGGTCACTAGGGTTCAAGCGTGATTCGCACAGCTATCCTCTATGTCGCATCGATCTTGCTTGAGCTACAAATCCATACCCCTCCATTGGTCTCCAGTGTTCTAGCCATCTATTGTGTCTCAAAAGTTGACATTCTCCTCATCGTATCTATTTTGTTGGCTATCCTTTGTGGCATCCATGCTCAATGGCCACCATAAGGGGTAGATGTGGGCATGAACGGGTTGTTGTTGTTGTTGTTTGTTCTCACTTTCATCTCCATGTACATGTTTGTATTAAAGTTTAGATCAACTCGAATCGTTGACTGCAATAATGTAGTGATCCTGAAGGGCTCTCCTTCACTGCCCAAGCCATCTATAAATGTGTCATACCTATCATCTCTTGCACTTTTATCACACTCATCGGGTGAGGCACTGGCCACTATGGCAAGTGCTCCTTTGGCAGTGGTTATTTTTCTGCAGTGAGTATGGAGGCCTCGGCATTCGCCTCTAGATTATATGTGAACAAAGAGGTGATGATCCACGAGGATTTCAATCATTTGCTGAGTTCATTGTTGAAATGATATGCCCTCACCTCCTCCTTTAGTCTCTCCTTCAGCAAAATCTTGCACATTTGAAGATGGTAAGCCTACTTTTTTATTATGAGGAAGTGCCAGATATGGCCCTGCTTTCTGCTTTTTATCAGTGGGAAAGTTTTGATCATATTATGGCGCTGGCCATATGGAAAATCACATATTCTTATTCAGTTAGAGAATGAAGGAGATTATATAATGGTATTCGCCAAAAAAATTATGGTGATGAATGTCTTTTTAGTGCGAATACTTAAATGGACTATGATCTGAGCTCAAAAATGAAATTTATCGGTGAGCTAGTATGGATTTCCTTCCATAATTACAAATTCATCACGACTATAAGAACACTAGTTAGTTCAGGGATGCCATCATTGATTTTTCTTTGAAGGTGCATGATTTTTTGACTACACATCTGGCAGCTAGCGAAGGTTTTCATCTCTCTAAGGTGTGAATTTGGTGTGGGAATTTTAATTTCTTAAGCCAGCCATATTCAAGAAATGATCAAATTTTGTTTAGCCATTCACACAATTTTGCCAGTGCACGCGGAAACGATACTGGAGGGATACCGCTGGCGGTTACAAAGCAACAAACAAAATTATTCAAGCACAAAAAAGTAAGATCACAACACAATAATTACAGCATAAACCACACAAACATCCAAACACATAAACTTTTACGTGAAAAATTCGATAAAAATAACTGAATCACAGCACACAAAAAAAATCCAGAGTTACAGAGAGTTCACCTTCACAAGAACAACGAGGATCTGCCACTTACAAAGTCTCCCGATCAACTTATTCTCATTCAGAAAATTCCAACTCTCACTATAGGTTGAAGGAGACCAACAGCTGTCGCAATGCTAAATTAGGGTTGGTCTCACCTTAAGGAAACATCCCCATAGGTTGGCTTTTATATTTAGGCTTCACATGGACCCAAAATGACCCAAAATGCCTCTAAAAATACTTAGGGGTCCACCAAAATCCATAACTGGGTTTCGGCGGGCGCCACACCGTGCTAGGGGACCCTTGTTTCGAACCACGGGGCGTCATAGCTTGCCTGAGCGCCATGACTCATGGCCATTGACTGCAATGACTGCAGAGCGCACTGGGGTGGGCTGGAGCGTCTGAATTTCCCCCCACTTATCCCGGAACATATTGGGACCTCCCAAAAACCCACCGGAGCTTCATTGACACATTCATGATGATTTAAATGATTTTCATATTCCAACAAACTATGTTCTATCTTAGCTACCTCAATCTTGGTTGGCCCCAACTCAACCATGAACATAATGCTTACACCTCATATGATGGAGCATTTTCACCTTGTATGAACATTGCCTATTTTATCTCTTTGTTGCAGCAACTTTGAAATTTCTGGAAGCATAATTTTGGCACCAAAAAAATAAAAAATAAAAACCAAAAAATTGCTCCGCCAGGCAATAAATCGGCCTGCATATAACTACTAACGGAATACTTTCCCAAAATCCTTGTCTCGATTGCACCTAGCTGATACTCCGTCCACATTACTACAGCCCGATTTCCCGTCCACTCATTTTAAATCATGTATAGTTTTCCGTGAATTTGTCCCCAAACTACCTCGAGCTTAATTCGTCTTCCTGTTCACTCACAAAAACCCTCGGACCGAAAGCGAGAAGGAGAAAATGTCTTCGTGGAATTCTTTTAATCTAGAAGTAGCATACCAGATGCTCGGATGGATCGCGTTCGCTTCTTGGTCGATCAGTTTCTATCCGCAAATCGTTCTGAATTTCAGACGCAGAAGTGTGGTGGGGTTGAACTTTGATTTTTTGGTGCTGAACTTGACCAAGCACTTGTCTTATTTGATTTACAATGCGGCGCTCTTCTTCAGTTCAGAAATTCAGAGACAATATCATGACAAGTATGGCTATGAGGAGATGATTCCAGTGGCAGCAAATGACGTTGCTTTCTCCATGCATGCTGTTCTATTGACGGGCTTTACATTGTTCCAAGTATTGATATATGACCGTGGAAATCAAAAGGTTTCAAAAACTTGCATTATAATCACCTCAGCCGCCTGGGCAGCTGCCTTAGTTTGTATTGCTTTTGCCTGGCCTAAGAAGTCCTGGCTGTGGCTTATTTCTGTCTTCAACACGATGCAAGTCATCATGACAGCAATCAAGTACATTCCCCAGGCATGCATGAACTTTAAACGCAAGAGCACAGTAGGATGGAGCATTGGAAATATAGTGCTAGATTTAATCGGAGGCCTTCTAAACTTTATCCAAATGGCTGTGCAGTCTATAGACCAAAATTCATGGGTAAACTTCTATGGCAATATAGGGAAGACGTTACTTTCGCTGGAAGTTGTGTTCTTCGACCTTTTGTTCATGCTTCAGCACTGTGTGTTCTATGCTGCGGACAAAAAGGAAGTGGTTGCCCAAACTAAATTCACAGAGATTGTTTAATCCGATTATATCATTATGTTATATTTGTATCATAGGTTCAATTTTTAAGCCACATTTTTCCTTTTTATTAAATCTCATCGTTTTTTCAAATAATATCATTTTTGTCTTTTATTATTAGAAAATACTTGACTTTATCCAA

Network for GWHGAAEX009294

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04193.13	PQ-loop	14	69	2.80E-18
PF04193.13	PQ-loop	152	208	3.30E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12386	CTNS	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.960
SRP064423	SRR2545915	Juvenile tuber	1.870
SRP108465	SRR5643513	five period of Gastrodia elata	2.060
	SRR5643514	five period of Gastrodia elata	2.390
	SRR5643515	five period of Gastrodia elata	2.240
	SRR5643524	five period of Gastrodia elata	2.140
	SRR5643525	five period of Gastrodia elata	2.180
	SRR5643528	five period of Gastrodia elata	2.520
	SRR5643658	five period of Gastrodia elata	3.230
	SRR5643659	five period of Gastrodia elata	1.990
	SRR5643660	five period of Gastrodia elata	1.940
	SRR5643661	five period of Gastrodia elata	1.100
	SRR5643662	five period of Gastrodia elata	1.630
	SRR5643663	five period of Gastrodia elata	2.350
	SRR5643664	five period of Gastrodia elata	1.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.420
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.470
SRP279888	Gastro	Gastrodia elata tuber	1.62
	Juven	Juvenile tuber	3.44
	Mother_Gastro	Mother tuber of Gastrodia elata	2.45
	Mother_Juven	Mother tuber of Juvenile	2.30