Detail information of GWHGAAEX009313/evm.TU.scaffold_242.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|387791448|ref|YP_006256513.1| | 8.00E-19 | cysteine protease [Solitalea canadensis DSM 3403] |
| KOG | KOG1543 | 2.00E-162 | Cysteine proteinase Cathepsin L |
| nr | gi|695012719|ref|XP_009393126.1| | 0 | PREDICTED: cathepsin B-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P05167|ALEU_HORVU | 1.00E-30 | Thiol protease aleurain (Precursor) |
| trEMBL | tr|W1P4Q2|W1P4Q2_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN01935.1} |
| TAIR | AT4G01610 | 2.00E-162 | Cysteine proteinases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000239 | 197740 | 224722 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009313
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08127.12 | Propeptide_C1 | 49 | 89 | 1.80E-11 |
| PF00112.22 | Peptidase_C1 | 109 | 343 | 2.60E-64 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0050790 | Biological Process | regulation of catalytic activity |
| GO:0008234 | Molecular Function | cysteine-type peptidase activity |
| GO:0004197 | Molecular Function | cysteine-type endopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.240 |
| SRR2545915 | Juvenile tuber | 48.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.700 |
| SRR5643514 | five period of Gastrodia elata | 26.610 | |
| SRR5643515 | five period of Gastrodia elata | 43.230 | |
| SRR5643524 | five period of Gastrodia elata | 52.320 | |
| SRR5643525 | five period of Gastrodia elata | 7.810 | |
| SRR5643528 | five period of Gastrodia elata | 8.960 | |
| SRR5643658 | five period of Gastrodia elata | 7.490 | |
| SRR5643659 | five period of Gastrodia elata | 26.560 | |
| SRR5643660 | five period of Gastrodia elata | 30.990 | |
| SRR5643661 | five period of Gastrodia elata | 38.160 | |
| SRR5643662 | five period of Gastrodia elata | 12.110 | |
| SRR5643663 | five period of Gastrodia elata | 31.880 | |
| SRR5643664 | five period of Gastrodia elata | 8.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.260 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.260 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.18 |
| Juven | Juvenile tuber | 12.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.32 | |
| Mother_Juven | Mother tuber of Juvenile | 9.89 |