Gene detail

Detail information of GWHGAAEX010519/evm.TU.scaffold_3.188

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1933	Cholesterol transport protein (Niemann-Pick C disease protein)
nr	gi\|743874487\|ref\|XP_010907089.1\|	PREDICTED: Niemann-Pick C1 protein-like [Elaeis guineensis]
trEMBL	tr\|U5D453\|U5D453_AMBTC	Uncharacterized protein {ECO:0000313\|EMBL:ERN17219.1}
TAIR	AT1G42470	Patched family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000002	12429767	12512940	+

Transcript Sequence
>GWHTAAEX010519 ATGGAGAGAAGGGCTCTACTTCTCCGCCCTCGCATGGGCTTGTTTGCAGTTTTCTTAATCGTTTTAAAGGGCTTACTCATATTTTCTTCAAAAACTCAGGGTTCTCTTTCGCCTTCCAGTGGAATGGGAGATATTCATAGAGAGGGTTATTGCTCTATGTACGGCATTTGTGCACAACGCAGTGATGGGAAGATTTTGAATTGTGCTAATGGTAGCCTTTCTACTAAGCCAGACATTTTACTGTCTTCTAAGATCCAGAGTTTATGTCCTACAATCTCTGGCAATGTTTGCTGCAACTCAGCACAATTTGAGATATTGCATGATCAAATTCAGCAAGTAGTTCCCTTACTTGTGGGGTGCCCAGCATGCTTGAGGAATTTCTTAAATTTTGTTTGTGAACTATCGTGCTCTCCAAATCAGAGTTTGTTTGTAAATGTGACTTCTGCTAAGAAGATAAATAATACGATGACTGTTAATAGAATTGATTATTTCATTACAAATACATATGGGGAACAGCTATTTAACTCTTGCAAAGATGTCAAATTTGGTAGCATGAATACACGAGTAATGGATTTTATTGGTTCAGGTGCTCAAAACTACAAAGATTTCTTAGCTTTTCTTGGGAGGCAAGCCGCTCTGAATACACCAGGATCACCATATAAAATTGACTTTCAAACTAATGGGCCTTTATCATCAGGGATGATGCCCTTTAATTCAAGTGTTTATTCTTGTGGTGATTCCTTATTGGGCTGTTCATGTGGTGATTGCTCTTCTTCAGCTACATGCCCTAATTCTACACGTCCAACTCTACTTAAGAAAGGCTTTTGCAAATTTGCAATGGGTTCTGTAAGGTTAAAATGTATAGATTTTTCTTTGGCCGTTCTGTACATTACAGCAATTCCTGCATTGTTATTTTGGGGATTCTTGCAAAGGAAAAGAGGAAGAAATCCTCTCACCGAACCAAAACTTTTGTTTAATGACAGTGTTAAGAATGAGCATCTTTCTGGGTACAAGCAGCAAATCACTGCCCCATCTGTGCAAGAGTCAAATGGGCCTCCTTTAGTGAAAGTGGTTCATCCTTTCGTTGTTCAGGATCATATGGCCAGAATTTTCAGGAAATATGGAACGTTTGTATCCCGAAAGCCAACTCTTGTTCTTTCTTTATCACTTGCTGTTCCAATTCTGCTTTGCATAGGTCTTCTTCATTTTAGAGTGGAAACAAATCCTGAAAAGCTTTGGGTGGGCCATGATAGTAAGGCTGCAGAGGAAAAAGGCTTTTTTGACCATCATCTTTCACCTTTTTACAGAATAGAACAGCTTGTATTAGCAACTATCCCTGGTTCTAAAAATGCCATGGCCCCCAGCATTGTGACCAATCAAAATATGAAATTACTTTTTAAATTACAAAAGAAGGTTGACTCATTGCGGGCAAATTATTCTGGAAGCATGGTGTCTCTTGCAGATATTTGTATGAAACCTCTGGCAGATTATTGTGCTACGCAAAGTGCCCTTCAGTATTTCAAAATAAATAGAGAGAGATACGATGATTATGGTGGTGTACAACATGCTGAATATTGTTTTGAGCATTATTCTTCAGAAGAAACATGTAGAAGTAGTTTCCATGCACCACTTGATCCAGGCACAGTTCTAGGAGGATTTTATGGAAACAACTTCTCTGAGGCATCTGCTTTCATTATTACCTATCCTGTCAACAATGAGGTTGATGATATTGGTAATAAAAACGGGAAGGCTGTGGCCTGGGAGAGGGCATTCATTCGGTTAGTCAAGGAAGAGCTGATTCCTATGGTACAATTGCAAAACCTTACGATTTCTTTTTCATCAGAAAGTTCTATCCAAGATGAGCTAGATAGAGAGAGTTCTGCTGATGTGGTAACCATATTGATCAGTTATATTTCAATGTTTGCTTACATATCAATTTCACTGGGGGATTCTTTGCGGCGGCCCTCTTTTTTAGTTACATCTAAGGTCTTACTTGGTCTCTCAGGAATTTTGATGGTTATGCTCTCAGTTCTTGGTTCAATTGGATTCTATAGTGCTATTGGAATAAAGTCTACACTAATAATAATGGAAGTCATTCCATTTCTTGTATTAGCGGTTGGGGTGGATAATATGCATATTCTTGTGCATGCTGTCAAACGTCAATCAGTAGAGATGTCCTTGGAAGGAAGAATATGCAATGCACTTGCTGAAGTTGGACCTTCAATAACCCTTGCTAGTTTGTCTGAAGTTTCAGCTTTTGCTGTTGGAAGTTTTATTCCAATGCCTGCTGTTTGTGTATTCTCTATGTTTTCAGCTTTGGCTGTTTTTCTGGACTTCATTTTGCAACTTACGGCTTTCATGGCGCTTATCATATTTGACAGTTTGAGAACTGTTGATAGTAGGATCGACTGTTTTCCATGTGTTAAACTTCCACAATCTGTTGTATCTGAAAGAGGTACTGGCCCCAAAAAACCAGGATTTCTTGTGCGTTATATGCAACATTTCCATGCACCCGCTCTTTCCATTCCTCGAGTTAAAATTGTGGTTATTACTTTATTCTCTGCAACTACTTTCTTGAGCATTGCACTCTGCACAAGGCTTCAACCTGGTTTGGAGCAAAAGATAGCCCCCTCGAAACTCTTATCTTCAGGATTACTATGA

Network for GWHGAAEX010519

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16414.4	NPC1_N	49	273	4.20E-60
PF02460.17	Patched	556	874	1.60E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12385	NPC1	Lysosome	map04142
K12385	NPC1	Cholesterol metabolism	map04979

Gene Ontology

GO term	Ontology	Name
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.610
SRP064423	SRR2545915	Juvenile tuber	7.330
SRP108465	SRR5643513	five period of Gastrodia elata	1.870
	SRR5643514	five period of Gastrodia elata	5.180
	SRR5643515	five period of Gastrodia elata	3.030
	SRR5643524	five period of Gastrodia elata	3.440
	SRR5643525	five period of Gastrodia elata	13.400
	SRR5643528	five period of Gastrodia elata	3.680
	SRR5643658	five period of Gastrodia elata	6.400
	SRR5643659	five period of Gastrodia elata	5.510
	SRR5643660	five period of Gastrodia elata	6.370
	SRR5643661	five period of Gastrodia elata	3.620
	SRR5643662	five period of Gastrodia elata	6.880
	SRR5643663	five period of Gastrodia elata	8.540
	SRR5643664	five period of Gastrodia elata	9.400
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.650
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.220
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.270
SRP279888	Gastro	Gastrodia elata tuber	11.58
	Juven	Juvenile tuber	13.47
	Mother_Gastro	Mother tuber of Gastrodia elata	1.02
	Mother_Juven	Mother tuber of Juvenile	5.17