Gene detail

Detail information of GWHGAAEX010520/evm.TU.scaffold_3.189

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1933	1.00E-94	Cholesterol transport protein (Niemann-Pick C disease protein)
nr	gi\|672185183\|ref\|XP_008812752.1\|	5.22E-152	PREDICTED: Niemann-Pick C1 protein-like [Phoenix dactylifera]
trEMBL	tr\|M0RSW1\|M0RSW1_MUSAM	1.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P16810_001}
TAIR	AT4G38350	1.00E-94	Patched family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000002	12515548	12573312	+

Transcript Sequence
>GWHTAAEX010520 ATGATATGGTTGTCTCCGGATGCATTTAGTTGCTGCCGTAAGTTTGTGAATGGGAGCTACTGCCCTCCTGATGATCAGTTTCCTTGTTGCAATTCCAACGGGGGCTCATGCAACATCCATGGGATATGCAAAGACTGCACGACGTGTTTTCACCAATCTGATTTGTATGGAGGTCGTCCATCTACAGCACAATTTAAAGAAATGCTTCCTTGGTTTCTCAATGCATTACCGTCTGCTAACTGTGCTAAGGGTGGTAAAGGACCATACACATCCAGTGTTGATCTTAATGGTTTTGATGGTGGAATGATTCATGCATCGTCATTTCGAACATACCATAAACCACTTAGTACACAAATGGATTATGTGAATGCATTGAAGGCTGCACGAGATTTCAGTTCTAAAGCTTCTGAGTCTTTGAAGATTCAGGTTTTTCCATATTCGGTCTTCTACATATACTTTGAGCAGTACCTTAATATATGGAAGACGGCTTTGATCATGATATCAATTGGTCTTGGTGCTGCATTCATAATATGCCTTCTCATCACTTTCAGCCTATGGACGTCAGCAATGATTTTGTTAGTGATATTGATGATTATCCTTAACATGATGGTAAGTACCGGAGATAGAGGGAGCCGGGCTAAAGAAGCGCTCAGCACAATGGGCACCTCTGTGATTAGCGGAATCACGCTTACAAAGCTAGTGGGTGTCTCAGTTCTACGTTTTGCAAAATCGCAAATCTTTGTGGTTTATTATTTCCAAATGTACTTGGCATTGGTTCTTATAGGATTCTTGCATGGACTGATCTTTCTTCCTGTTCTGCTTAGCATTTGCGGGCCTCCTTCAAGATGGGCTGCTGAAAAGAAGACAGAAGAAGATCAGTCAATGGTTGCAGCGCGAGTGGCCAGTTGATGGTAATAGAAAAACAATAGCAAATTATTTATAGCCTCAAGATTGAGGCACTGACAGTGGTACAAGGTGATTTGAAGATGAGACTTAAGAGCTTGCTCAGATGAGTATACTGAGAGTGATGCTATTGACTTAAGAGCCACTACTTTAGCGATTATCTTCACTATGCTTTTTCACGCTAAACGAAGAGATGTTGGATTGATATTTATAGGCGCTGGGGTAGCAATTTTGAATGAGTGGTTACAGAGGTAACTGTCGAACGGTTGCAAGAAATTGTATAAGTCGCGGGTAGCCATGGATAGTTGTAGACATCTTCGAGCAATTACAGCAATTATTCGGCATTTCCTCGCATGCGTCCAAGCTCTCAGAGATCGTAGGCGGCGTGATTTCCACCGTGCAACCGCAACGATCATCAGCATCGCTAATAAGTAACTCCTACGACCTCAATTAAGATCAATCGAGGCCGTCAAATGCTTTGACTATCCGAGGCATCGATAGCAAAGTGGACGCAGGTGCAAGCATATGAGGAGCATGCTTCAATATGTATAGGCGAGTAGGTGGCTGCAGTTTGAGAGACAAATGGTGTGTGGTTCCGAGCAATTATCGCACGACCGTTGGTAGTTGCGAGTGGTTGCAAAAGTGCAGTTGTGAGGAGATGTGAGGATGGTTTTGAACAGTTATGTGAAGTCATCTATAGCAGCTACGAACAATTACACTGCCCGCTTCTATGTTCAAGCCTTTAGAGTCACATTCTACCTCGTGAGCAAAAGAAATGAGGTGCAAGCAACATCTGATCAGACTTTTTGAGAAGATCACGGGCTACTATCCTCCGCTACACACATGTAAGGAGCAGAAGTGAGAAAGCTAACAACTACTGCAAGTGATATGGATGTTCGAGCAACACAGAGGCAAAGGTGAGTCG

Network for GWHGAAEX010520

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02460.17	Patched	201	277	1.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12385	NPC1	Lysosome	map04142
K12385	NPC1	Cholesterol metabolism	map04979

Gene Ontology

GO term	Ontology	Name
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.580
SRP064423	SRR2545915	Juvenile tuber	3.710
SRP108465	SRR5643513	five period of Gastrodia elata	1.400
	SRR5643514	five period of Gastrodia elata	2.670
	SRR5643515	five period of Gastrodia elata	1.180
	SRR5643524	five period of Gastrodia elata	1.630
	SRR5643525	five period of Gastrodia elata	6.040
	SRR5643528	five period of Gastrodia elata	1.850
	SRR5643658	five period of Gastrodia elata	3.480
	SRR5643659	five period of Gastrodia elata	3.430
	SRR5643660	five period of Gastrodia elata	3.300
	SRR5643661	five period of Gastrodia elata	2.690
	SRR5643662	five period of Gastrodia elata	4.500
	SRR5643663	five period of Gastrodia elata	4.760
	SRR5643664	five period of Gastrodia elata	5.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.780
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.980
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.820
SRP279888	Gastro	Gastrodia elata tuber	5.77
	Juven	Juvenile tuber	5.72
	Mother_Gastro	Mother tuber of Gastrodia elata	0.81
	Mother_Juven	Mother tuber of Juvenile	2.00