Detail information of GWHGAAEX010559/evm.TU.scaffold_30.32
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2759 | 0 | Vacuolar H+-ATPase V1 sector, subunit H |
| nr | gi|672136263|ref|XP_008791823.1| | 0 | PREDICTED: probable V-type proton ATPase subunit H isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q84ZC0|VATH_ORYSJ | 0 | Probable V-type proton ATPase subunit H |
| trEMBL | tr|A0A061F6S3|A0A061F6S3_THECC | 0 | Vacuolar ATP synthase subunit H family protein isoform 2 {ECO:0000313|EMBL:EOY10174.1} |
| TAIR | AT3G42050 | 0 | vacuolar ATP synthase subunit H family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000033 | 1624038 | 1633712 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010559
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03224.13 | V-ATPase_H_N | 6 | 325 | 7.50E-79 |
| PF11698.7 | V-ATPase_H_C | 332 | 443 | 7.30E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02144 | ATPeV1H | Metabolic pathways | map01100 |
| Oxidative phosphorylation | map00190 | ||
| mTOR signaling pathway | map04150 | ||
| Phagosome | map04145 | ||
| Lysosome | map04142 | ||
| Synaptic vesicle cycle | map04721 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:1902600 | Biological Process | hydrogen ion transmembrane transport |
| GO:0046961 | Molecular Function | proton-transporting ATPase activity, rotational mechanism |
| GO:0000221 | Cellular Component | vacuolar proton-transporting V-type ATPase, V1 domain |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 52.690 |
| SRR2545915 | Juvenile tuber | 54.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 49.030 |
| SRR5643514 | five period of Gastrodia elata | 50.820 | |
| SRR5643515 | five period of Gastrodia elata | 46.690 | |
| SRR5643524 | five period of Gastrodia elata | 47.160 | |
| SRR5643525 | five period of Gastrodia elata | 40.500 | |
| SRR5643528 | five period of Gastrodia elata | 39.650 | |
| SRR5643658 | five period of Gastrodia elata | 35.520 | |
| SRR5643659 | five period of Gastrodia elata | 47.420 | |
| SRR5643660 | five period of Gastrodia elata | 44.980 | |
| SRR5643661 | five period of Gastrodia elata | 51.110 | |
| SRR5643662 | five period of Gastrodia elata | 46.060 | |
| SRR5643663 | five period of Gastrodia elata | 46.480 | |
| SRR5643664 | five period of Gastrodia elata | 40.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 57.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 40.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 56.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 56.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 55.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 59.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 56.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 55.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 62.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 53.950 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 62.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 62.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 62.96 |
| Juven | Juvenile tuber | 80.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 56.89 | |
| Mother_Juven | Mother tuber of Juvenile | 89.26 |