Detail information of GWHGAAEX011235/evm.TU.scaffold_36.102


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG09361.00E-69Clathrin adaptor complex, small subunit
nrgi|743848184|ref|XP_010939294.1|2.38E-84PREDICTED: AP-3 complex subunit sigma [Elaeis guineensis]
Swissprottr|Q8VZ37|AP3S_ARATH3.00E-70AP-3 complex subunit sigma
trEMBLtr|M0TTU1|M0TTU1_MUSAM3.00E-81Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P26380_001}
TAIRAT3G508601.00E-69Clathrin adaptor complex small chain family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003645379644577632+
Transcript Sequence

Network for GWHGAAEX011235

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01217.19Clat_adaptor_s11433.10E-48
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12399AP3S Lysosome map04142

Gene Ontology

GO term OntologyName
GO:0006886Biological Processintracellular protein transport
GO:0016192Biological Processvesicle-mediated transport
GO:0030117Cellular Componentmembrane coat

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.720
SRR2545915Juvenile tuber33.630
SRP108465SRR5643513five period of Gastrodia elata24.800
SRR5643514five period of Gastrodia elata29.460
SRR5643515five period of Gastrodia elata26.340
SRR5643524five period of Gastrodia elata27.300
SRR5643525five period of Gastrodia elata30.990
SRR5643528five period of Gastrodia elata29.690
SRR5643658five period of Gastrodia elata21.810
SRR5643659five period of Gastrodia elata21.570
SRR5643660five period of Gastrodia elata19.540
SRR5643661five period of Gastrodia elata17.940
SRR5643662five period of Gastrodia elata23.210
SRR5643663five period of Gastrodia elata23.500
SRR5643664five period of Gastrodia elata18.580
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.370
SRR6049655Rhizomagastrodiae_C368-T10_good_138.460
SRR6049656Rhizomagastrodiae_C368-T07_good_129.940
SRR6049657Rhizomagastrodiae_C368-T07_good_122.220
SRR6049658Rhizomagastrodiae_C368-T04_good_127.670
SRR6049659Rhizomagastrodiae_C368-T04_good_124.260
SRR6049660Rhizomagastrodiae_C368-T01_good_128.670
SRR6049661Rhizomagastrodiae_C368-T04_good_122.800
SRR6049662Rhizomagastrodiae_C368-T01_good_133.700
SRR6049663Rhizomagastrodiae_C368-T01_good_134.060
SRR6049664Rhizomagastrodiae_C368-T10_good_132.440
SRR6049665Rhizomagastrodiae_C368-T10_good_132.440
SRP279888GastroGastrodia elata tuber 21.39
JuvenJuvenile tuber20.38
Mother_GastroMother tuber of Gastrodia elata 37.44
Mother_JuvenMother tuber of Juvenile 20.45