Detail information of GWHGAAEX012209/evm.TU.scaffold_41.115
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|319953307|ref|YP_004164574.1| | 1.00E-90 | manganese transport protein mnth [Cellulophaga algicola DSM 14237] |
| KOG | KOG1291 | 0 | Mn2+ and Fe2+ transporters of the NRAMP family |
| nr | gi|672127339|ref|XP_008787132.1| | 0 | PREDICTED: metal transporter Nramp2-like [Phoenix dactylifera] |
| Swissprot | tr|Q9FN18|NRAM4_ARATH | 0 | Metal transporter Nramp4 |
| trEMBL | tr|W9QCW0|W9QCW0_9ROSA | 0 | Metal transporter Nramp3 {ECO:0000313|EMBL:EXB28725.1} |
| TAIR | AT5G67330 | 0 | natural resistance associated macrophage protein 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000040 | 5942694 | 5963212 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012209
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01566.17 | Nramp | 79 | 439 | 4.60E-121 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K21398 | SLC11A2, DMT1, NRAMP2 | Lysosome | map04142 |
| Ferroptosis | map04216 | ||
| Mineral absorption | map04978 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030001 | Biological Process | metal ion transport |
| GO:0046873 | Molecular Function | metal ion transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.460 |
| SRR2545915 | Juvenile tuber | 45.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.260 |
| SRR5643514 | five period of Gastrodia elata | 19.190 | |
| SRR5643515 | five period of Gastrodia elata | 22.030 | |
| SRR5643524 | five period of Gastrodia elata | 19.240 | |
| SRR5643525 | five period of Gastrodia elata | 47.410 | |
| SRR5643528 | five period of Gastrodia elata | 39.880 | |
| SRR5643658 | five period of Gastrodia elata | 34.020 | |
| SRR5643659 | five period of Gastrodia elata | 20.860 | |
| SRR5643660 | five period of Gastrodia elata | 16.980 | |
| SRR5643661 | five period of Gastrodia elata | 21.050 | |
| SRR5643662 | five period of Gastrodia elata | 14.850 | |
| SRR5643663 | five period of Gastrodia elata | 23.220 | |
| SRR5643664 | five period of Gastrodia elata | 12.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.010 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.660 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 29.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.020 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 48.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.11 |
| Juven | Juvenile tuber | 18.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.55 | |
| Mother_Juven | Mother tuber of Juvenile | 8.37 |