Detail information of GWHGAAEX012792/evm.TU.scaffold_46.50


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG09370Adaptor complexes medium subunit family
nrgi|743757664|ref|XP_010923038.1|0PREDICTED: AP-1 complex subunit mu-2 [Elaeis guineensis]
Swissprottr|O22715|AP1M2_ARATH0AP-1 complex subunit mu-2
trEMBLtr|W1PPV1|W1PPV1_AMBTC0Uncharacterized protein {ECO:0000313|EMBL:ERN09205.1}
TAIRAT1G607800Clathrin adaptor complexes medium subunit family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004226894912710454-
Transcript Sequence

Network for GWHGAAEX012792

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01217.19Clat_adaptor_s51312.00E-06
PF00928.20Adap_comp_sub1594264.30E-92
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12393AP1M Lysosome map04142

Gene Ontology

GO term OntologyName
GO:0016192Biological Processvesicle-mediated transport
GO:0006886Biological Processintracellular protein transport
GO:0030131Cellular Componentclathrin adaptor complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms119.020
SRR2545915Juvenile tuber101.960
SRP108465SRR5643513five period of Gastrodia elata84.750
SRR5643514five period of Gastrodia elata81.740
SRR5643515five period of Gastrodia elata78.340
SRR5643524five period of Gastrodia elata86.680
SRR5643525five period of Gastrodia elata134.550
SRR5643528five period of Gastrodia elata125.520
SRR5643658five period of Gastrodia elata133.530
SRR5643659five period of Gastrodia elata95.650
SRR5643660five period of Gastrodia elata105.230
SRR5643661five period of Gastrodia elata98.050
SRR5643662five period of Gastrodia elata99.090
SRR5643663five period of Gastrodia elata96.720
SRR5643664five period of Gastrodia elata94.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_175.190
SRR6049655Rhizomagastrodiae_C368-T10_good_196.600
SRR6049656Rhizomagastrodiae_C368-T07_good_176.130
SRR6049657Rhizomagastrodiae_C368-T07_good_180.190
SRR6049658Rhizomagastrodiae_C368-T04_good_173.310
SRR6049659Rhizomagastrodiae_C368-T04_good_178.700
SRR6049660Rhizomagastrodiae_C368-T01_good_173.420
SRR6049661Rhizomagastrodiae_C368-T04_good_167.630
SRR6049662Rhizomagastrodiae_C368-T01_good_184.080
SRR6049663Rhizomagastrodiae_C368-T01_good_175.320
SRR6049664Rhizomagastrodiae_C368-T10_good_184.180
SRR6049665Rhizomagastrodiae_C368-T10_good_184.180
SRP279888GastroGastrodia elata tuber 128.99
JuvenJuvenile tuber141.17
Mother_GastroMother tuber of Gastrodia elata 88.35
Mother_JuvenMother tuber of Juvenile 108.51