Gene detail

Detail information of GWHGAAEX013880/evm.TU.scaffold_54.87

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434403337\|ref\|YP_007146222.1\|	2.00E-34	hypothetical protein Cylst_1247 [Cylindrospermum stagnale PCC 7417]
KOG	KOG4683	2.00E-116	Uncharacterized conserved protein
nr	gi\|672181667\|ref\|XP_008811061.1\|	0	PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Phoenix dactylifera]
trEMBL	tr\|C5XTC0\|C5XTC0_SORBI	0	Putative uncharacterized protein Sb04g021400 {ECO:0000313\|EMBL:EES06893.1}
TAIR	AT5G27730	2.00E-116	Protein of unknown function (DUF1624)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	2484467	2492783	-

Transcript Sequence
>GWHTAAEX013880 AGGGAATAGAGCAGCAAACCGTTGCGAAGGAAAAGGACTGCGACGCTCTGTAATCCCTTCCCCTAAAACCCTTTTCTATCTTGTCCAATTCGCCTTTCCCCCTTCTCGGCAGCGCGCAATGCGGGGGAGATAGAAAAACCTATCTTCTTGATCACTCCATTGGGGCGGCGGCGATTATGGGAATGCTTGAGCTGATGAGGACTGATGATGCTGGAAGAGTCGCCGATCCCAGCAAGATCCTTCGCGCTCTCGAAGAGGGCTCTTCTTGCCATTCCAAGCATGAGGAATCCGTCATGCTTTTGGCGAGAAAACCCCTAAAAGATTTTGTTGAAGGCGATGCGGATTTCCCTCCGCGGTCAGCAGCGAAGGCCCCGCGTCTCGTGTCGGTCGATGTTTTCCGAGGAATCACAGTAGCGCTAATGATTCTTGTGGATGATGCCGGCGGTATTTTTCCTTTTCTGAATCATTCCCCGTGGGACGGAGTGGCCATTGCTGATTTCGTTATGCCTTTCTTCTTGTTCATTGTTGGGGTGTCACTGGGATTGACGTGCAAGAGAGTTTCAAATAGAATAACTGCAACCAGGAATGTGCTCTTCAGAGCACTCAAATTGTTCGCCATGGGACTTTTGCTCCAGGGTGGATATTTTCATGGTGTTCGAGACTTAACCTTCGGTGTTGATTTGCTCCATATTCGCTTCATGGGAGTGCTTCAGAGAATAGCCATAGCCTATCTCTTGGCTGCATTGTGCGAGGTTTGGCACAGAAGTTCAGTCTTGGTGGATTCCGGACACTCCCTAATCAAAAGATACAAAGTACAACTGTTGATTGTGGCTCTGCTAACTGCTGCGTACATATTCCTTGTGTATGGTCTGTTTGTACCTGATTGGGACTACAATATAACATTGCCGAACGGCAATAGCAAGTCTTACTCAGTGAAATGCGGGGTGAGGGGCTACACGAGCCCTGCTTGCAATGCCGCAGGGATGATCGACCGCAAGCTGCTAGGCGCCGACCATCTGTACAAAAGGCCGGTATATGGAAGAACAAAGGAATGCAGTGTTAACTCCCCTCGCAGCGGCCCGCTTCCGGAGGGCGCTCCGGCGTGGTGCAAAGCCCCCTTCGATCCCGAAGGCCTCCTCAGCACCATTATGGCCGTCGTCACCTGCTTCGTCGGCCTCCACTATGGCCACGTCATCGTGCACTTCAAGCATGGCAAGGACAGGATGGTCCAATGGATGATTCCCTCTGTGTTTCTGCAGGCGCTCGCCTTCTGTCTGCATTTCTGCGGAATGAGGATGAACAAAGCGCTGTACAGCGCGAGCTACGCTTGCGTAACGGCTGGCGCGTCGGGGCTCCTCCTGGCTGGAATCTATCTTCTGGTGGATGTTTGCGGGCTGAGGAGGCCGATGCTGGTGCTGGAGTGGATGGGGAAGCATGCTCTGGCGATCTATGTGCTGGTGGCTTGCAACTTGCTCCCTTTCTTCATTCAGGGATTTTATTGGAAGCAGCCTGCAAATAATCTGTTGAGCTTGATTGGGATTGTGGATCATCATAATGGCTAACACAGCCTGATACTGAATTTTCATGATATAGACTGCCCTTCGAAGTTGCTGTGAAGAAGAGACTAAAATATCAGCTGTGATAATAATGATAGTCTTATTTATTTATAGTTTAAAGGCTATTGTAATAGGTTTTCTATTTGTATATTATAAATTGTAAGGGGCTTTCAACTAATTTAATTGATTTGAAATTACGGTTGGATTCTTTTCTCTCCATTGGATTGAAGGTCAGTTCAAGTGCCCACAATTATCAGGCTTTTGTTTT

Network for GWHGAAEX013880

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07786.11	DUF1624	67	201	2.70E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10532	HGSNAT	Metabolic pathways	map01100
		Glycosaminoglycan degradation	map00531
		Lysosome	map04142

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.100
SRP064423	SRR2545915	Juvenile tuber	2.050
SRP108465	SRR5643513	five period of Gastrodia elata	4.550
	SRR5643514	five period of Gastrodia elata	2.740
	SRR5643515	five period of Gastrodia elata	2.690
	SRR5643524	five period of Gastrodia elata	2.000
	SRR5643525	five period of Gastrodia elata	19.500
	SRR5643528	five period of Gastrodia elata	11.600
	SRR5643658	five period of Gastrodia elata	20.850
	SRR5643659	five period of Gastrodia elata	0.360
	SRR5643660	five period of Gastrodia elata	0.310
	SRR5643661	five period of Gastrodia elata	0.320
	SRR5643662	five period of Gastrodia elata	0.470
	SRR5643663	five period of Gastrodia elata	0.890
	SRR5643664	five period of Gastrodia elata	1.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.320
SRP279888	Gastro	Gastrodia elata tuber	0.69
	Juven	Juvenile tuber	0.62
	Mother_Gastro	Mother tuber of Gastrodia elata	3.77
	Mother_Juven	Mother tuber of Juvenile	4.25